Added sci-biology back into the stable overlay

svn path=/stable/; revision=749

8 files changed, 152 insertions, 0 deletions

diff --git a/sci-biology/ensembl-perl/Manifest b/sci-biology/ensembl-perl/Manifest
new file mode 100644
index 0000000..cc791f2
--- /dev/null
+++ b/sci-biology/ensembl-perl/Manifest
@@ -0,0 +1,7 @@
+MD5 4167bbcf0e0b05c834ac8b680e2e0955 ensembl-perl-31.ebuild 773
+MD5 92dcb9f863ac5144527c046e5b2d3746 ensembl-perl-32.ebuild 780
+MD5 92dcb9f863ac5144527c046e5b2d3746 ensembl-perl-33.ebuild 780
+MD5 b17aafa4efc4e955cbc2374091962976 files/Makefile.PL 311
+MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-ensembl-perl-31 0
+MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-ensembl-perl-32 0
+MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-ensembl-perl-33 0
diff --git a/sci-biology/ensembl-perl/ensembl-perl-31.ebuild b/sci-biology/ensembl-perl/ensembl-perl-31.ebuild
new file mode 100644
index 0000000..d00116e
--- /dev/null
+++ b/sci-biology/ensembl-perl/ensembl-perl-31.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+inherit cvs perl-module
+
+CATEGORY="sci-biology"
+
+DESCRIPTION="Additional perl modules for bioperl that can be used to easily access the EnsEMBL database"
+HOMEPAGE="http://www.ensembl.org/"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+ECVS_LOCALNAME="EnsEMBL"
+ECVS_SERVER="cvsro.sanger.ac.uk:/cvsroot/CVSmaster"
+ECVS_MODULE="ensembl/modules/Bio/EnsEMBL"
+ECVS_BRANCH="branch-ensembl-${PV}"
+ECVS_USER="cvsuser"
+ECVS_PASS="CVSUSER"
+
+
+DEPEND="=sci-biology/bioperl-1.4"
+
+src_unpack()
+{
+	cvs_src_unpack
+
+	cp ${FILESDIR}/Makefile.PL ${WORKDIR}/
+}
+
+src_compile()
+{
+	cd ${WORKDIR}
+
+	perl-module_src_compile
+}
+
+src_install()
+{
+	cd ${WORKDIR}
+
+	perl-module_src_install
+}
diff --git a/sci-biology/ensembl-perl/ensembl-perl-32.ebuild b/sci-biology/ensembl-perl/ensembl-perl-32.ebuild
new file mode 100644
index 0000000..bcd7ff4
--- /dev/null
+++ b/sci-biology/ensembl-perl/ensembl-perl-32.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+inherit cvs perl-module
+
+CATEGORY="sci-biology"
+
+DESCRIPTION="Additional perl modules for bioperl that can be used to easily access the EnsEMBL database"
+HOMEPAGE="http://www.ensembl.org/"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+ECVS_LOCALNAME="EnsEMBL"
+ECVS_SERVER="cvsro.sanger.ac.uk:/cvsroot/CVSmaster"
+ECVS_MODULE="ensembl/modules/Bio/EnsEMBL"
+ECVS_BRANCH="branch-ensembl-${PV}"
+ECVS_USER="cvsuser"
+ECVS_PASS="CVSUSER"
+
+
+DEPEND="=sci-biology/bioperl-1.4"
+
+src_unpack()
+{
+	cvs_src_unpack
+
+	cp ${FILESDIR}/Makefile.PL ${WORKDIR}/
+}
+
+src_compile()
+{
+	cd ${WORKDIR}
+
+	perl-module_src_compile
+}
+
+src_install()
+{
+	cd ${WORKDIR}
+
+	perl-module_src_install
+}
diff --git a/sci-biology/ensembl-perl/ensembl-perl-33.ebuild b/sci-biology/ensembl-perl/ensembl-perl-33.ebuild
new file mode 100644
index 0000000..bcd7ff4
--- /dev/null
+++ b/sci-biology/ensembl-perl/ensembl-perl-33.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+inherit cvs perl-module
+
+CATEGORY="sci-biology"
+
+DESCRIPTION="Additional perl modules for bioperl that can be used to easily access the EnsEMBL database"
+HOMEPAGE="http://www.ensembl.org/"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+ECVS_LOCALNAME="EnsEMBL"
+ECVS_SERVER="cvsro.sanger.ac.uk:/cvsroot/CVSmaster"
+ECVS_MODULE="ensembl/modules/Bio/EnsEMBL"
+ECVS_BRANCH="branch-ensembl-${PV}"
+ECVS_USER="cvsuser"
+ECVS_PASS="CVSUSER"
+
+
+DEPEND="=sci-biology/bioperl-1.4"
+
+src_unpack()
+{
+	cvs_src_unpack
+
+	cp ${FILESDIR}/Makefile.PL ${WORKDIR}/
+}
+
+src_compile()
+{
+	cd ${WORKDIR}
+
+	perl-module_src_compile
+}
+
+src_install()
+{
+	cd ${WORKDIR}
+
+	perl-module_src_install
+}
diff --git a/sci-biology/ensembl-perl/files/Makefile.PL b/sci-biology/ensembl-perl/files/Makefile.PL
new file mode 100644
index 0000000..cafb2aa
--- /dev/null
+++ b/sci-biology/ensembl-perl/files/Makefile.PL
@@ -0,0 +1,10 @@
+use ExtUtils::MakeMaker 5.0;
+
+WriteMakefile(
+	      NAME        => "Bio::EnsEMBL",
+	      VERSION     => "31",
+	      AUTHOR      => "Sanger Center (ensembl-dev@ebi.ac.uk)",
+	      ABSTRACT    => "BioPerl modules to access ensembl",
+	      INSTALLDIRS => "vendor",
+	      PMLIBDIRS   => [ "EnsEMBL" ]
+	      );
diff --git a/sci-biology/ensembl-perl/files/digest-ensembl-perl-31 b/sci-biology/ensembl-perl/files/digest-ensembl-perl-31
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/sci-biology/ensembl-perl/files/digest-ensembl-perl-31
diff --git a/sci-biology/ensembl-perl/files/digest-ensembl-perl-32 b/sci-biology/ensembl-perl/files/digest-ensembl-perl-32
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/sci-biology/ensembl-perl/files/digest-ensembl-perl-32
diff --git a/sci-biology/ensembl-perl/files/digest-ensembl-perl-33 b/sci-biology/ensembl-perl/files/digest-ensembl-perl-33
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/sci-biology/ensembl-perl/files/digest-ensembl-perl-33