1 files changed, 120 insertions, 0 deletions
diff --git a/sci-chemistry/jmol/jmol-12.2.27.ebuild b/sci-chemistry/jmol/jmol-12.2.27.ebuild
new file mode 100644
index 0000000..c8a4095
--- /dev/null
+++ b/sci-chemistry/jmol/jmol-12.2.27.ebuild
@@ -0,0 +1,120 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=1
+WEBAPP_OPTIONAL="yes"
+
+inherit eutils webapp java-pkg-2 java-ant-2
+
+MY_P="Jmol"
+
+DESCRIPTION="Jmol is a java molecular viever for 3-D chemical structures."
+SRC_URI="
+	mirror://sourceforge/${PN}/${MY_P}-${PV}-full.tar.gz
+	http://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar"
+
+HOMEPAGE="http://jmol.sourceforge.net/"
+KEYWORDS="~x86 ~amd64"
+LICENSE="LGPL-2.1"
+
+IUSE="client-only vhosts"
+
+WEBAPP_MANUAL_SLOT="yes"
+SLOT="0"
+
+COMMON_DEP="dev-java/commons-cli
+	dev-java/itext
+	sci-libs/jmol-acme
+	sci-libs/vecmath-objectclub
+	sci-libs/naga"
+RDEPEND=">=virtual/jre-1.5
+	${COMMON_DEP}"
+DEPEND=">=virtual/jdk-1.5
+	dev-java/saxon:6.5
+	!client-only? ( ${WEBAPP_DEPEND} )
+	${COMMON_DEP}"
+
+pkg_setup() {
+
+	use client-only || webapp_pkg_setup
+	java-pkg-2_pkg_setup
+}
+
+src_unpack() {
+
+	unpack ${A}
+	cd "${S}"
+
+	epatch "${FILESDIR}"/${P}-nointl.patch
+
+	rm -v "${S}"/*.jar "${S}"/plugin-jars/*.jar || die
+	cd "${S}/jars"
+
+# We still have to use netscape.jar on amd64 until a nice way to include plugin.jar comes along.
+	if use amd64; then
+		mv -v netscape.jar netscape.tempjar || die "Failed to move netscape.jar."
+		rm -v *.jar *.tar.gz || die "Failed to remove jars."
+		mv -v netscape.tempjar netscape.jar || die "Failed to move netscape.tempjar."
+	fi
+
+	java-pkg_jar-from vecmath-objectclub vecmath-objectclub.jar vecmath1.2-1.14.jar
+	java-pkg_jar-from itext iText.jar itext-1.4.5.jar
+	java-pkg_jar-from jmol-acme jmol-acme.jar Acme.jar
+	java-pkg_jar-from commons-cli-1 commons-cli.jar commons-cli-1.0.jar
+	java-pkg_jar-from naga
+	java-pkg_jar-from saxon-6.5 saxon.jar
+
+	mkdir -p "${S}/build/appjars" || die
+}
+
+src_compile() {
+	# prevent absorbing dep's classes
+	eant -Dlibjars.uptodate=true main
+}
+
+src_install() {
+
+	java-pkg_dojar build/Jmol.jar
+	dohtml -r  build/doc/* || die "Failed to install html docs."
+	dodoc *.txt doc/*license* || die "Failed to install licenses."
+
+	java-pkg_dolauncher ${PN} --main org.openscience.jmol.app.Jmol \
+		--java_args "-Xmx512m"
+
+	if ! use client-only ; then
+		webapp_src_preinst || die "Failed webapp_src_preinst."
+		cmd="cp Jmol.js build/Jmol.jar "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp build/JmolApplet*.jar "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp applet.classes "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp -r build/classes/* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp -r build/appletjars/* "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp "${FILESDIR}"/caffeine.xyz "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+		cmd="cp "${FILESDIR}"/index.html "${D}${MY_HTDOCSDIR}"" ; ${cmd} \
+		|| die "${cmd} failed."
+
+		webapp_src_install || die "Failed running webapp_src_install"
+	fi
+}
+
+pkg_postinst() {
+
+	if ! use client-only ; then
+		webapp_pkg_postinst || die "webapp_pkg_postinst failed"
+	fi
+
+}
+
+pkg_prerm() {
+
+	if ! use client-only ; then
+		webapp_pkg_prerm || die "webapp_pkg_prerm failed"
+	fi
+
+}