add latest cgminer

svn path=/; revision=319

6 files changed, 388 insertions, 0 deletions

diff --git a/app-misc/cgminer/Manifest b/app-misc/cgminer/Manifest
new file mode 100644
index 0000000..573bf92
--- /dev/null
+++ b/app-misc/cgminer/Manifest
@@ -0,0 +1,2 @@
+DIST cgminer-2.1.1.tar.bz2 351317 RMD160 5cd3e3555587426c01009400a2b0a66a09318f83 SHA1 3a1e0dbd8250d28e7ae85e6727c50332e835e73b SHA256 c0af455481c62919253c9bebd0c289f93e6d28c9b0e2de43894e77eba424f27e
+EBUILD cgminer-2.1.1.ebuild 1980 RMD160 bcced23a29d9352f2fcc536001320a38ee920092 SHA1 3d0fb32ec13a444e27f4a2e58cae0f25f746e6ac SHA256 1f8ace8d5b61e3259e36349aae3883428907e9410f40be8ffe576b9872ffa811
diff --git a/app-misc/cgminer/cgminer-2.1.1.ebuild b/app-misc/cgminer/cgminer-2.1.1.ebuild
new file mode 100644
index 0000000..afd1884
--- /dev/null
+++ b/app-misc/cgminer/cgminer-2.1.1.ebuild
@@ -0,0 +1,96 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=4
+
+DESCRIPTION="CPU/GPU miner in c for bitcoin"
+HOMEPAGE="https://bitcointalk.org/index.php?topic=28402.0"
+SRC_URI="http://ck.kolivas.org/apps/${PN}/${P}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+
+IUSE="adl altivec opencl padlock sse2 sse2_4way sse4"
+REQUIRED_USE='
+	adl? ( opencl )
+	altivec? ( ppc ppc64 )
+	padlock? ( || ( amd64 x86 ) )
+	sse2? ( || ( amd64 x86 ) )
+	sse4? ( amd64 )
+'
+
+DEPEND='
+	net-misc/curl
+	sys-libs/ncurses
+	>=dev-libs/jansson-2
+	sse2? (
+		>=dev-lang/yasm-1.0.1
+	)
+	sse4? (
+		>=dev-lang/yasm-1.0.1
+	)
+	opencl? (
+		|| (
+			virtual/opencl-sdk
+			app-admin/eselect-opencl
+			dev-util/ati-stream-sdk
+			dev-util/ati-stream-sdk-bin
+			dev-util/amdstream
+			dev-util/amd-app-sdk
+			dev-util/amd-app-sdk-bin
+			dev-util/nvidia-cuda-sdk[opencl]
+			dev-util/intel-opencl-sdk
+		)
+	)
+'
+RDEPEND="${DEPEND}"
+DEPEND="${DEPEND}
+	dev-util/pkgconfig
+	sys-apps/sed
+	adl? (
+		dev-util/amd-adl-sdk
+	)
+"
+
+src_prepare() {
+	sed -i 's/\(^\#define WANT_.*\(SSE\|PADLOCK\|ALTIVEC\)\)/\/\/ \1/' miner.h
+	ln -s /usr/include/ADL/* ADL_SDK/
+}
+
+src_configure() {
+	local CFLAGS="${CFLAGS}"
+	if ! use altivec; then
+		sed -i 's/-faltivec//g' configure
+	else
+		CFLAGS="${CFLAGS} -DWANT_ALTIVEC=1"
+	fi
+	use padlock && CFLAGS="${CFLAGS} -DWANT_VIA_PADLOCK=1"
+	if use sse2; then
+		if use amd64; then
+			CFLAGS="${CFLAGS} -DWANT_X8664_SSE2=1"
+		else
+			CFLAGS="${CFLAGS} -DWANT_X8632_SSE2=1"
+		fi
+	fi
+	use sse2_4way && CFLAGS="${CFLAGS} -DWANT_SSE2_4WAY=1"
+	use sse4 && CFLAGS="${CFLAGS} -DWANT_X8664_SSE4=1"
+	CFLAGS="${CFLAGS}" \
+	econf \
+		$(use_enable adl) \
+		$(use_enable opencl)
+	if use opencl; then
+		# sanitize directories
+		sed -i 's/^(\#define CGMINER_PREFIX ).*$/\1"'"${EPREFIX}/usr/share/cgminer"'"/' config.h
+	fi
+}
+
+src_install() {
+	dobin cgminer
+	dodoc AUTHORS NEWS README
+	if use opencl; then
+		insinto /usr/share/cgminer
+		doins *.cl
+	fi
+}
diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
new file mode 100644
index 0000000..eb16310
--- /dev/null
+++ b/sci-biology/seaview/ChangeLog
@@ -0,0 +1,207 @@
+# ChangeLog for sci-biology/seaview
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.40 2011/03/20 20:02:27 jlec Exp $
+
+  20 Mar 2011; Justin Lecher <jlec@gentoo.org> seaview-4.2.5.ebuild,
+  seaview-4.2.12.ebuild:
+  x11-libs/fltk SLOTMOVE 1.1 -> 1, corrected ebuild accordingly
+
+  22 Feb 2011; Tomáš Chvátal <scarabeus@gentoo.org> -seaview-4.1.ebuild,
+  -seaview-4.2.3.ebuild, seaview-4.2.5.ebuild, seaview-4.2.12.ebuild,
+  -files/seaview-20071113-glibc-2.10.patch, -files/seaview.desktop:
+  Remove old. Say goodbye to pdflib pdf useflag.
+
+  01 Feb 2011; Jeff Gardner <je_fro@gentoo.org> seaview-4.2.12.ebuild:
+  Fix to use pkg-config instead of deprecated xft-config.
+
+*seaview-4.2.12 (01 Feb 2011)
+
+  01 Feb 2011; Jeff Gardner <je_fro@gentoo.org> +seaview-4.2.12.ebuild:
+  Adding latest version.
+
+  16 Jul 2010; Markos Chandras <hwoarang@gentoo.org> seaview-4.2.5.ebuild:
+  Stable on amd64 wrt bug #328429
+
+  16 Jul 2010; Christian Faulhammer <fauli@gentoo.org> seaview-4.2.5.ebuild:
+  stable x86, bug 328429
+
+  04 Jul 2010; Mark Loeser <halcy0n@gentoo.org> seaview-4.1.ebuild:
+  Change x11-libs/fltk[-noxft] dep to fltk[xft] as the useflag has been
+  renamed
+
+*seaview-4.2.5 (16 May 2010)
+
+  16 May 2010; Jeff Gardner <je_fro@gentoo.org> +seaview-4.2.5.ebuild:
+  Latest version, clean out old.
+
+*seaview-4.2.3 (20 Mar 2010)
+
+  20 Mar 2010; Andrey Kislyuk <weaver@gentoo.org>
+  -files/seaview-4.2-gcc44.patch, -seaview-4.2.ebuild,
+  +seaview-4.2.3.ebuild:
+  Version bump and address bug 290900
+
+  09 Mar 2010; Jonathan Callen <abcd@gentoo.org> seaview-4.1.ebuild,
+  seaview-4.2.ebuild:
+  QA: Do not use absolute path to icon when in standard dirs (in
+  make_desktop_entry())
+
+*seaview-4.2 (18 Oct 2009)
+
+  18 Oct 2009; Andrey Kislyuk <weaver@gentoo.org>
+  +files/seaview-4.2-gcc44.patch, +seaview-4.2.ebuild:
+  Version bump and gcc-4.4 patch
+
+  07 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> metadata.xml,
+  +seaview-4.1.ebuild, seaview-20071113.ebuild:
+  Drop keywords in seaview-20071113, will expedite 4.1
+
+*seaview-4.1 (07 Oct 2009)
+
+  07 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> metadata.xml,
+  +seaview-4.1.ebuild:
+  Version bump, take ownership, cleanup. Thanks to Martin Mokrejs and Joel
+  Berendzen (bug 246778).
+
+  04 Sep 2009; Samuli Suominen <ssuominen@gentoo.org>
+  seaview-20071113.ebuild, +files/seaview-20071113-glibc-2.10.patch:
+  Fix building with GLIBC 2.10+ wrt #282431.
+
+  24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
+  Giving up maintainership of this package.
+
+  14 Nov 2008; Olivier Fisette <ribosome@gentoo.org>
+  seaview-20071113.ebuild:
+  Restricted dependency to x11-libs/fltk:1.1 (see bug #207107).
+
+  26 Aug 2008; Olivier Fisette <ribosome@gentoo.org>
+  seaview-20071113.ebuild:
+  Added missing pdflib dependency. Fixes bug #233044.
+
+*seaview-20071113 (12 Feb 2008)
+
+  12 Feb 2008; Olivier Fisette <ribosome@gentoo.org> -seaview-2.2.ebuild,
+  +seaview-20071113.ebuild:
+  Reverting to date-based version scheme. We cannot use upstream's versions
+  since they keep modifying the package whilst keeping the same version.
+  PDFlib is no longer needed as recent versions include PDFlib lite (fixes
+  bug #208334). Commiting straight to stable as this is the same as 2.2,
+  which was stable.
+
+  31 Dec 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
+  Fixing my email addy in the Changelog
+
+  26 Dec 2007; <je_fro@gentoo.org> Manifest:
+  Dropping old versions.
+
+  26 Dec 2007; Samuli Suominen <drac@gentoo.org> seaview-2.2.ebuild:
+  amd64 stable wrt #203185
+
+  25 Dec 2007; nixnut <nixnut@gentoo.org> seaview-2.2.ebuild:
+  Stable on ppc wrt bug 203185
+
+  24 Dec 2007; Dawid Węgliński <cla@gentoo.org> seaview-2.2.ebuild:
+  Stable on x86 (bug #203185)
+
+  23 Dec 2007; <je_fro@gentoo.org> seaview-2.2.ebuild:
+  Adding menu entries.
+
+  22 Dec 2007; <je_fro@gentoo.org> -seaview-20060213.ebuild,
+  -seaview-20070919.ebuild:
+  Removing obsolete versions
+
+*seaview-2.2 (19 Dec 2007)
+
+  19 Dec 2007; <je_fro@gentoo.org> +seaview-2.2.ebuild:
+  Bump to latest version.
+
+  22 Oct 2007; <je_fro@gentoo.org> +files/seaview.desktop,
+  seaview-20070919.ebuild:
+  Adding desktop entry
+
+  21 Oct 2007; <je_fro@gentoo.org> seaview-20041220.ebuild,
+  seaview-20060213.ebuild, seaview-20070919.ebuild:
+  remove excessive quotes
+
+  21 Oct 2007; Jeff Gardner <je_fro@gentoo.org> seaview-20070919.ebuild:
+  seaview 20070919 appears to work with the latest pdflib
+
+  21 Oct 2007; Jeff Gardner <je_fro@gentoo.org> seaview-20070919.ebuild:
+  Adding sci-biology/muscle dependency
+
+*seaview-20070919 (21 Oct 2007)
+
+  21 Oct 2007; <je_fro@gentoo.org> seaview-20041220.ebuild,
+  seaview-20060213.ebuild, +seaview-20070919.ebuild:
+  Bumping to latest version which contains several new features.
+
+  25 Mar 2007; Danny van Dyk <kugelfang@gentoo.org> seaview-20041220.ebuild,
+  seaview-20060213.ebuild:
+  QA: Fixed assignment of CFLAGS. Makefile respects CXXFLAGS now. Fixed
+  include and library paths.
+
+  22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog:
+  Redigest for Manifest2
+
+  03 Nov 2006; Olivier Fisette <ribosome@gentoo.org>
+  -seaview-20050713.ebuild:
+  Pruned old version.
+
+*seaview-20060213 (08 Mar 2006)
+
+  08 Mar 2006; Donnie Berkholz <spyderous@gentoo.org>;
+  +seaview-20060213.ebuild:
+  Bump to most recent modification date on upstream's unversioned tarball.
+  Fixes problem with file-open dialog not finding files, among others.
+
+*seaview-20050713 (07 Aug 2005)
+
+  07 Aug 2005; Olivier Fisette <ribosome@gentoo.org>
+  +seaview-20050713.ebuild:
+  New version.
+
+  24 Apr 2005; Michael Hanselmann <hansmi@gentoo.org>
+  seaview-20041220.ebuild:
+  Stable on ppc.
+
+  30 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
+  seaview-20041220.ebuild:
+  Ebuild cleanup.
+
+*seaview-20041220 (09 Jan 2005)
+
+  09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> -files/29seaview,
+  -seaview-1-r1.ebuild, +seaview-20041220.ebuild:
+  Changed versioning scheme. (Upstream does not use version numbers.)
+
+*seaview-1-r1 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +files/29seaview, +seaview-1-r1.ebuild:
+  Moved from app-sci/seaview to sci-biology/seaview.
+
+  22 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org> seaview-1-r1.ebuild:
+  Added to ~amd64, bug #72078
+
+  31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> seaview-1-r1.ebuild:
+  Added to x86.
+
+*seaview-1 (24 Jun 2004)
+
+  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  seaview-1-r1.ebuild, metedata.xml:
+  Added app-sci/clustalw as a mandatory dependency.
+  Set maintainer (ribosome).
+
+*seaview-1 (24 Jun 2004)
+
+  24 Jun 2004; David Holm <dholm@gentoo.org> seaview-1.ebuild:
+  Added to ~ppc.
+
+*seaview-1 (23 Jun 2004)
+
+  23 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  seaview-1.ebuild, metadata.xml, files/29seaview :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #54055
+
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
new file mode 100644
index 0000000..40dae82
--- /dev/null
+++ b/sci-biology/seaview/Manifest
@@ -0,0 +1,4 @@
+DIST seaview_4.3.0.tar.gz 306756 RMD160 2a16742e46dc46a895ed71c9f09740b3005f0e39 SHA1 db07722f487c234cac57cbd4c26065ec494da435 SHA256 6fe4c0f5b65aaa2c0b6298e07269be476cd22cec0d60628125f43133cf23e702
+EBUILD seaview-4.3.0.ebuild 1566 RMD160 6b3d62ac4ec23b616416c2240f1182a544081543 SHA1 730e779628b9c0a0631b5520426d44394ae4c05e SHA256 fe4cc09d30789adc5e95979f1362565837432fffe6cc48965b888fa30a09e48e
+MISC ChangeLog 6973 RMD160 595b90e993cbee2d7fb9644966c33803d59cbcb4 SHA1 dceeb60078a285a304b5220155361b20e7d2b1a0 SHA256 9e431d81b1751316b09495f87e7339685279268d728ee677166eb9ffd5c2da58
+MISC metadata.xml 619 RMD160 f7bd8491d8c59372963d3f53e322e52d509c0c81 SHA1 d35f32cd0b1171a837f6c9d0dbeb3e396a44fb90 SHA256 ee63d33ca527ca555056c6bc3a7d89fa9b5f32e5f82b7eae27b1c030c80ced9e
diff --git a/sci-biology/seaview/metadata.xml b/sci-biology/seaview/metadata.xml
new file mode 100644
index 0000000..0c1ebc3
--- /dev/null
+++ b/sci-biology/seaview/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+	<longdescription>
+		SeaView is a graphical multiple sequence alignment editor developped by
+		Manolo Gouy. SeaView is able to read and write various alignment
+		formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to
+		manually edit the alignment, and also to run DOT-PLOT or CLUSTALW
+		programs to locally improve the alignment.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/seaview/seaview-4.3.0.ebuild b/sci-biology/seaview/seaview-4.3.0.ebuild
new file mode 100644
index 0000000..9a08b77
--- /dev/null
+++ b/sci-biology/seaview/seaview-4.3.0.ebuild
@@ -0,0 +1,63 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI="2"
+
+inherit toolchain-funcs multilib eutils base
+
+DESCRIPTION="A graphical multiple sequence alignment editor"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
+SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="+xft"
+
+DEPEND="x11-libs/fltk:1
+	xft? (	x11-libs/libXft
+			x11-libs/fltk:1[xft] )"
+RDEPEND="${DEPEND}
+	sci-biology/clustalw
+	|| ( sci-libs/libmuscle sci-biology/muscle )
+	sci-biology/phyml"
+
+S="${WORKDIR}/${PN}"
+
+src_prepare() {
+	# respect CXXFLAGS (package uses them as CFLAGS)
+	sed -i \
+		-e "s:^CXX.*:CXX = $(tc-getCXX):" \
+		-e "s:\$(OPT):${CXXFLAGS}:" \
+		-e "s:^OPT:#OPT:" \
+		-e "s:^USE_XFT:#USE_XFT:" \
+		-e "s:^#HELPFILE:HELPFILE:" \
+		-e "s:^#PHYMLNAME:PHYMLNAME:" \
+		Makefile || die "sed failed while editing Makefile"
+
+	if use xft; then
+		sed -i \
+			-e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $(pkg-config --cflags xft):" \
+			-e "s:-lXft:$(pkg-config --libs xft):" \
+			Makefile || die "sed failed while editing Makefile to enable xft"
+	else
+		sed -i -e "s:-lXft::" Makefile || die
+	fi
+	base_src_prepare
+}
+
+src_install() {
+	dobin seaview || die
+
+	# /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile
+	insinto /usr/share/seaview
+	doins example.nxs seaview.html
+
+	insinto /usr/share/seaview/images
+	doins seaview.xpm || die
+
+	make_desktop_entry seaview Seaview
+
+	doman seaview.1 || die
+}