profit: new protein least-squares alignment package.

The ebuild should be good, but the actual package seems to be missing a file.
Emailed upstream about this and await a response.

1 files changed, 49 insertions, 0 deletions

diff --git a/sci-chemistry/profit/profit-2.5.3.ebuild b/sci-chemistry/profit/profit-2.5.3.ebuild
new file mode 100644
index 0000000..a155aa9
--- /dev/null
+++ b/sci-chemistry/profit/profit-2.5.3.ebuild
@@ -0,0 +1,49 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit eutils toolchain-funcs flag-o-matic
+
+MY_PN="ProFit"
+MY_P="${MY_PN}V${PV}"
+DESCRIPTION="Designed to be the ultimate protein least squares fitting program"
+HOMEPAGE="http://www.bioinf.org.uk/software/profit/"
+RESTRICT="fetch"
+ORIG_URI="${PN}.tar.gz"
+SRC_URI="${P}.tar.gz"
+LICENSE="free-noncomm"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE="gzip"
+RDEPEND=""
+DEPEND="${RDEPEND}"
+S="${WORKDIR}/${MY_P}"
+
+pkg_nofetch() {
+	elog "Download ${ORIG_URI} from ${HOMEPAGE}"
+	elog "Rename it to ${SRC_URI} and place it in ${DISTDIR}."
+}
+
+src_compile() {
+	use gzip && append-flags -DGUNZIP_SUPPORT
+
+	emake \
+		CC=$(tc-getCC) \
+		COPT="${CFLAGS}" \
+		|| die "emake failed"
+}
+
+src_install() {
+	doexe src/${PN}
+	insinto /usr/share/${PN}
+	doins ProFit.help mdm78.mat
+
+	cat << EOF >> "${T}"/${PN}
+HELPDIR="/usr/share/${PN}"
+DATADIR="/usr/share/${PN}"
+EOF
+
+	newenvd "${T}"/${PN} 50${PN}
+
+	dodoc 00NEW.FEATURES 00Read.Me COPYING.DOC HISTORY INSTALL doc/ProFit.pdf
+}