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path: root/sci-biology
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* Replace fixlocalpod with perl_delete_localpodAndreas K. Hüttel2014-11-161-19/+19
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key EBE6A336BE19039C!)
* Replace fixlocalpod with perl_delete_localpodAndreas K. Hüttel2014-11-163-5/+9
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key EBE6A336BE19039C!)
* Update PostgreSQL dependencies and/or checks to virtual/postgresql.Aaron W. Swenson2014-11-031-10/+6
| | | | (Portage version: 2.2.8-r2/cvs/Linux x86_64, signed Manifest commit with key D1BBFDA0)
* Update PostgreSQL dependencies and/or checks to virtual/postgresql.Aaron W. Swenson2014-11-033-5/+9
| | | | (Portage version: 2.2.8-r2/cvs/Linux x86_64, signed Manifest commit with key D1BBFDA0)
* Stable for amd64 wrt bug #525378José María Alonso2014-11-031-19/+17
| | | | (Portage version: 2.2.8-r2/cvs/Linux x86_64, signed Manifest commit with key F253DB15)
* Stable for amd64 wrt bug #525378José María Alonso2014-11-032-3/+6
| | | | (Portage version: 2.2.8-r2/cvs/Linux x86_64, signed Manifest commit with key F253DB15)
* sci-biology/stride: Fix 404 on patches, #525346Justin Lecher2014-10-311-16/+16
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/stride: Fix 404 on patches, #525346Justin Lecher2014-10-312-3/+6
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2014-10-301-1/+25
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2014-10-302-1/+52
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/consed: Import to tree; drop old EPAI=1 version, #526742Justin Lecher2014-10-261-7/+21
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/consed: Import to tree; drop old EPAI=1 version, #526742Justin Lecher2014-10-263-73/+98
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Remove old due to old EAPIAndreas K. Hüttel2014-10-251-8/+18
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key EBE6A336BE19039C!)
* Remove old due to old EAPIAndreas K. Hüttel2014-10-252-73/+5
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key EBE6A336BE19039C!)
* sci-biology/seqan: Fix file collision, #526586Justin Lecher2014-10-241-16/+16
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/seqan: Fix file collision, #526586Justin Lecher2014-10-242-2/+11
| | | | (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Fix headerPatrick Lauer2014-10-191-12/+2
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, unsigned Manifest commit)
* Fix headerPatrick Lauer2014-10-191-20/+9
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, unsigned Manifest commit)
* Fix headerPatrick Lauer2014-10-192-4/+7
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, unsigned Manifest commit)
* Fix headerPatrick Lauer2014-10-192-4/+7
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/seqan: Version BUmpJustin Lecher2014-10-171-15/+21
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/seqan: Version BUmpJustin Lecher2014-10-174-2/+101
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Non-maintainer commit: fix building, approved by Justin LecherSergey Popov2014-10-171-19/+11
| | | | (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key 0x1F357D42)
* Non-maintainer commit: fix building, approved by Justin LecherSergey Popov2014-10-172-4/+11
| | | | (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key 0x1F357D42)
* sci-biology/stride: Put patches in my devspace, #525346Justin Lecher2014-10-141-7/+18
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/stride: Put patches in my devspace, #525346Justin Lecher2014-10-143-43/+12
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/express: Version BUmp; thanks Michael Schubert for the initial ↵Justin Lecher2014-10-131-10/+21
| | | | | | patch, #525188 (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/express: Version BUmp; thanks Michael Schubert for the initial ↵Justin Lecher2014-10-133-1/+99
| | | | | | patch, #525188 (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/cufflinks: Drop debugging flags, fix compatibility with newer ↵Justin Lecher2014-10-021-15/+18
| | | | | | samtools, #524252 (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/cufflinks: Drop debugging flags, fix compatibility with newer ↵Justin Lecher2014-10-024-1/+102
| | | | | | samtools, #524252 (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BUmpJustin Lecher2014-09-301-23/+3
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BUmpJustin Lecher2014-09-302-1/+52
| | | | (Portage version: 2.2.14_rc1/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/cufflinks: Version BUmpJustin Lecher2014-09-251-15/+17
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/cufflinks: Version BUmpJustin Lecher2014-09-252-1/+45
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/cufflinks: Fix dep due to uncompatible samtools releaseJustin Lecher2014-09-251-11/+19
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/cufflinks: Fix dep due to uncompatible samtools releaseJustin Lecher2014-09-252-2/+6
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Install bam headers and create libbam.so, #523644Justin Lecher2014-09-251-15/+17
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Install bam headers and create libbam.so, #523644Justin Lecher2014-09-253-1/+139
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Add missing build dep, #523586Justin Lecher2014-09-241-16/+16
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Add missing build dep, #523586Justin Lecher2014-09-242-5/+9
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/plink: Rename USE lapack -> blas, fixing build problems, #514106Justin Lecher2014-09-221-17/+17
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/plink: Rename USE lapack -> blas, fixing build problems, #514106Justin Lecher2014-09-222-6/+12
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Version Bump, #523224; drop oldJustin Lecher2014-09-201-6/+26
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Version Bump, #523224; drop oldJustin Lecher2014-09-206-163/+78
| | | | (Portage version: 2.2.13/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/vienna-rna: Version Bump, #522850Justin Lecher2014-09-151-8/+21
| | | | (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/vienna-rna: Version Bump, #522850Justin Lecher2014-09-153-1/+131
| | | | (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Drop ebuild with deprecated EAPIJustin Lecher2014-09-152-54/+4
| | | | (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Drop ebuild with deprecated EAPIJustin Lecher2014-09-151-17/+15
| | | | (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2014-09-151-16/+20
| | | | (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2014-09-152-1/+52
| | | | (Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)