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Diffstat (limited to 'sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild')
-rw-r--r-- | sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild | 142 |
1 files changed, 0 insertions, 142 deletions
diff --git a/sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild b/sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild deleted file mode 100644 index d083881ab707..000000000000 --- a/sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild +++ /dev/null @@ -1,142 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild,v 1.17 2013/04/23 14:01:32 jlec Exp $ - -EAPI="3" - -PYTHON_DEPEND="python? 2" - -inherit autotools eutils flag-o-matic fortran-2 python toolchain-funcs versionator - -MY_PV=$(get_version_component_range 1-3) -MY_P="${PN}-${MY_PV}" - -DESCRIPTION="Evaluation of electrostatic properties of nanoscale biomolecular systems" -HOMEPAGE="http://www.poissonboltzmann.org/apbs/" -SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz" - -SLOT="0" -LICENSE="BSD" -IUSE="arpack doc mpi openmp python tools" -KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux" - -RDEPEND=" - dev-libs/maloc[mpi=] - virtual/blas - sys-libs/readline - arpack? ( sci-libs/arpack ) - tools? ( !sci-libs/gts ) - mpi? ( virtual/mpi )" -DEPEND="${DEPEND} - virtual/pkgconfig" - -S="${WORKDIR}"/"${MY_P}-source" - -pkg_setup() { - fortran-2_pkg_setup - use python && python_set_active_version 2 -} - -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-openmp.patch \ - "${FILESDIR}"/${P}-install-fix.patch \ - "${FILESDIR}"/${PN}-1.2.0-contrib.patch \ - "${FILESDIR}"/${PN}-1.2.0-link.patch \ - "${FILESDIR}"/${P}-autoconf-2.64.patch \ - "${FILESDIR}"/${P}-shared.patch \ - "${FILESDIR}"/${P}-multilib.patch \ - "${FILESDIR}"/${P}-parallelbuild.patch - sed "s:GENTOO_PKG_NAME:${PN}:g" \ - -i Makefile.am || die "Cannot correct package name" - # this test is broken - sed '/ion-pmf/d' -i examples/Makefile.am || die - eautoreconf - find . -name "._*" -exec rm -f '{}' \; -} - -src_configure() { - local myconf="--docdir=${EPREFIX}/usr/share/doc/${PF}" - use arpack && myconf="${myconf} --with-arpack=${EPREFIX}/usr/$(get_libdir)" - - # check which mpi version is installed and tell configure - if use mpi; then - export CC="${EPREFIX}/usr/bin/mpicc" - export F77="${EPREFIX}/usr/bin/mpif77" - - if has_version sys-cluster/mpich; then - myconf="${myconf} --with-mpich=${EPREFIX}/usr" - elif has_version sys-cluster/mpich2; then - myconf="${myconf} --with-mpich2=${EPREFIX}/usr" - elif has_version sys-cluster/openmpi; then - myconf="${myconf} --with-openmpi=${EPREFIX}/usr" - fi - fi || die "Failed to select proper mpi implementation" - - # we need the tools target for python - if use python && ! use tools; then - myconf="${myconf} --enable-tools" - fi - - econf \ - --disable-maloc-rebuild \ - --enable-shared \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - $(use_enable openmp) \ - $(use_enable python) \ - $(use_enable tools) \ - ${myconf} -} - -src_test() { - export LC_NUMERIC=C - cd examples && make test \ - || die "Tests failed" - grep -q 'FAILED' "${S}"/examples/TESTRESULTS.log && die "Tests failed" -} - -src_install() { - emake -j1 DESTDIR="${D}" install \ - || die "make install failed" - - if use tools; then - mv tools/mesh/{,mesh-}analysis || die - dobin tools/mesh/* || die - - if use arpack; then - dobin tools/arpack/* || die - fi - - insinto /usr/share/${PN} - doins -r tools/conversion || die - doins -r tools/visualization/opendx || die - - dobin tools/manip/{born,coulomb} || die - - doins -r tools/matlab || die - fi - - insinto $(python_get_sitedir)/${PN} - doins tools/manip/*.py || die - - if use python && ! use mpi; then - insinto $(python_get_sitedir)/${PN} - doins tools/python/{*.py,*.pqr,*.so} || die - doins tools/python/*/{*.py,*.so} || die - fi - - dodoc AUTHORS INSTALL README NEWS ChangeLog \ - || die "Failed to install docs" - - if use doc; then - dohtml -r doc/* || die "Failed to install html docs" - fi -} - -pkg_postinst() { - python_mod_optimize ${PN} -} - -pkg_postrm() { - python_mod_cleanup ${PN} -} |