diff options
53 files changed, 422 insertions, 32 deletions
diff --git a/sci-biology/embassy-construct/ChangeLog b/sci-biology/embassy-construct/ChangeLog index 9604a56580e1..15c488650dd5 100644 --- a/sci-biology/embassy-construct/ChangeLog +++ b/sci-biology/embassy-construct/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/embassy-construct # Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-construct/ChangeLog,v 1.6 2005/07/27 05:00:14 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-construct/ChangeLog,v 1.7 2005/08/07 21:41:10 ribosome Exp $ + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> + embassy-construct-1.0.0.ebuild: + Ported to the improved embassy.eclass. 27 Jul 2005; Lina Pezzella <j4rg0n@gentoo.org> embassy-construct-1.0.0.ebuild: diff --git a/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild b/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild index fae928ff5f13..d32d93b3e57d 100644 --- a/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild +++ b/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild @@ -1,8 +1,10 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild,v 1.7 2005/07/27 05:00:14 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-construct/embassy-construct-1.0.0.ebuild,v 1.8 2005/08/07 21:41:10 ribosome Exp $ -inherit embassy-2.10 +EBOV="2.10.0" + +inherit embassy DESCRIPTION="Sequence alignment add-on package for EMBOSS" diff --git a/sci-biology/embassy-domainatrix/ChangeLog b/sci-biology/embassy-domainatrix/ChangeLog index 1f16d7b93f32..eb56dd186a76 100644 --- a/sci-biology/embassy-domainatrix/ChangeLog +++ b/sci-biology/embassy-domainatrix/ChangeLog @@ -1,6 +1,15 @@ # ChangeLog for sci-biology/embassy-domainatrix # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.9 2005/07/28 02:12:58 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.10 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-domainatrix-0.1.0 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> + +embassy-domainatrix-0.1.0.ebuild, embassy-domainatrix-1.0.0-r1.ebuild: + Ported version 1.0.0-r1 to the improved embassy.eclass. Version 0.1.0 is + really an upgrade; it is normal to be required to downgrade from 1.0.0 to + 0.1.0 to upgrade to EMBASSY 3.0.0. This is an issue with upstream's + versionning scheme. 28 Jul 2005; Olivier Fisette <ribosome@gentoo.org> -embassy-domainatrix-1.0.0.ebuild: diff --git a/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0.ebuild b/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0.ebuild new file mode 100644 index 000000000000..42f64ac2a8a2 --- /dev/null +++ b/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0.ebuild @@ -0,0 +1,11 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/embassy-domainatrix-0.1.0.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="Protein domain analysis add-on package for EMBOSS" + +KEYWORDS="~ppc ~ppc-macos ~x86" diff --git a/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild b/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild index 878736a41f0d..4d00681c2000 100644 --- a/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild +++ b/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild @@ -1,9 +1,11 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild,v 1.4 2005/06/26 21:00:53 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild,v 1.5 2005/08/07 21:41:10 ribosome Exp $ -inherit embassy-2.10 +EBOV="2.10.0" -DESCRIPTION="Protein 3D analysis add-on package for EMBOSS" +inherit embassy + +DESCRIPTION="Protein domain analysis add-on package for EMBOSS" KEYWORDS="ppc ppc-macos x86" diff --git a/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-0.1.0 b/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-0.1.0 new file mode 100644 index 000000000000..e46a187329b3 --- /dev/null +++ b/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-0.1.0 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 655f6ec58e0b9dfdac111fd9481359cb DOMAINATRIX-0.1.0.tar.gz 349882 diff --git a/sci-biology/embassy-domalign/ChangeLog b/sci-biology/embassy-domalign/ChangeLog new file mode 100644 index 000000000000..5ae0165ea979 --- /dev/null +++ b/sci-biology/embassy-domalign/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/embassy-domalign +# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/ChangeLog,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-domalign-0.1.0 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +embassy-domalign-0.1.0.ebuild: + Initial import. Part of EMBASSY 3.0.0. + diff --git a/sci-biology/embassy-domalign/embassy-domalign-0.1.0.ebuild b/sci-biology/embassy-domalign/embassy-domalign-0.1.0.ebuild new file mode 100644 index 000000000000..44d159e4c244 --- /dev/null +++ b/sci-biology/embassy-domalign/embassy-domalign-0.1.0.ebuild @@ -0,0 +1,11 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domalign/embassy-domalign-0.1.0.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="Protein domain alignment add-on package for EMBOSS" + +KEYWORDS="~ppc ~ppc-macos ~x86" diff --git a/sci-biology/embassy-domalign/files/digest-embassy-domalign-0.1.0 b/sci-biology/embassy-domalign/files/digest-embassy-domalign-0.1.0 new file mode 100644 index 000000000000..12636b748f4b --- /dev/null +++ b/sci-biology/embassy-domalign/files/digest-embassy-domalign-0.1.0 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 4332d7de49b27f257b58a90510223eb7 DOMALIGN-0.1.0.tar.gz 347672 diff --git a/sci-biology/embassy-domalign/metadata.xml b/sci-biology/embassy-domalign/metadata.xml new file mode 100644 index 000000000000..e9391a41a838 --- /dev/null +++ b/sci-biology/embassy-domalign/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> +</pkgmetadata> diff --git a/sci-biology/embassy-domsearch/ChangeLog b/sci-biology/embassy-domsearch/ChangeLog new file mode 100644 index 000000000000..56d75a3ea084 --- /dev/null +++ b/sci-biology/embassy-domsearch/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/embassy-domsearch +# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-domsearch-0.1.0 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +embassy-domsearch-0.1.0.ebuild: + Initial import. Part of EMBASSY 3.0.0. + diff --git a/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0.ebuild b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0.ebuild new file mode 100644 index 000000000000..694d93ed2a42 --- /dev/null +++ b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0.ebuild @@ -0,0 +1,11 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="Protein domain search add-on package for EMBOSS" + +KEYWORDS="~ppc ~ppc-macos ~x86" diff --git a/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0 b/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0 new file mode 100644 index 000000000000..f335d1470ee8 --- /dev/null +++ b/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 c62f9b69a9ed9580d4489a8de9ea4863 DOMSEARCH-0.1.0.tar.gz 352793 diff --git a/sci-biology/embassy-domsearch/metadata.xml b/sci-biology/embassy-domsearch/metadata.xml new file mode 100644 index 000000000000..e9391a41a838 --- /dev/null +++ b/sci-biology/embassy-domsearch/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> +</pkgmetadata> diff --git a/sci-biology/embassy-emnu/ChangeLog b/sci-biology/embassy-emnu/ChangeLog index 7950943ae9ed..c885a035bc1e 100644 --- a/sci-biology/embassy-emnu/ChangeLog +++ b/sci-biology/embassy-emnu/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/embassy-emnu # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-emnu/ChangeLog,v 1.9 2005/07/28 02:14:49 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-emnu/ChangeLog,v 1.10 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-emnu-1.05-r2 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> + embassy-emnu-1.05-r1.ebuild, +embassy-emnu-1.05-r2.ebuild: + Ported 1.05-r1 to the improved embassy.eclass. The new version is part of + EMBASSY 3.0.0. 28 Jul 2005; Olivier Fisette <ribosome@gentoo.org> -embassy-emnu-1.05.ebuild: diff --git a/sci-biology/embassy-emnu/embassy-emnu-1.05-r1.ebuild b/sci-biology/embassy-emnu/embassy-emnu-1.05-r1.ebuild index 4aa255ae82df..fdabf6d25b1b 100644 --- a/sci-biology/embassy-emnu/embassy-emnu-1.05-r1.ebuild +++ b/sci-biology/embassy-emnu/embassy-emnu-1.05-r1.ebuild @@ -1,8 +1,10 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-emnu/embassy-emnu-1.05-r1.ebuild,v 1.4 2005/06/26 21:02:43 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-emnu/embassy-emnu-1.05-r1.ebuild,v 1.5 2005/08/07 21:41:10 ribosome Exp $ -inherit embassy-2.10 +EBOV="2.10.0" + +inherit embassy DESCRIPTION="EMBOSS Menu is Not UNIX - Simple menu of EMBOSS applications" diff --git a/sci-biology/embassy-emnu/embassy-emnu-1.05-r2.ebuild b/sci-biology/embassy-emnu/embassy-emnu-1.05-r2.ebuild new file mode 100644 index 000000000000..84dd4ba511e4 --- /dev/null +++ b/sci-biology/embassy-emnu/embassy-emnu-1.05-r2.ebuild @@ -0,0 +1,19 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-emnu/embassy-emnu-1.05-r2.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="EMBOSS Menu is Not UNIX - Simple menu of EMBOSS applications" + +KEYWORDS="~ppc ~ppc-macos ~x86" + +RESTRICT="nomirror" + +RDEPEND="sys-libs/ncurses + ${RDEPEND}" + +DEPEND="sys-libs/ncurses + ${DEPEND}" diff --git a/sci-biology/embassy-emnu/files/digest-embassy-emnu-1.05-r2 b/sci-biology/embassy-emnu/files/digest-embassy-emnu-1.05-r2 new file mode 100644 index 000000000000..2557112c73e1 --- /dev/null +++ b/sci-biology/embassy-emnu/files/digest-embassy-emnu-1.05-r2 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 b3a7fc11e46f7166ddeec11f2fe03d9b EMNU-1.05.tar.gz 348924 diff --git a/sci-biology/embassy-esim4/ChangeLog b/sci-biology/embassy-esim4/ChangeLog index 6b6e51ba4aa6..f2d283f35971 100644 --- a/sci-biology/embassy-esim4/ChangeLog +++ b/sci-biology/embassy-esim4/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/embassy-esim4 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.9 2005/07/28 02:16:27 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.10 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-esim4-1.0.0-r2 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> + embassy-esim4-1.0.0-r1.ebuild, +embassy-esim4-1.0.0-r2.ebuild: + Ported 1.0.0-r1 to the improved embassy.eclass. The new version is part of + EMBASSY 3.0.0. 28 Jul 2005; Olivier Fisette <ribosome@gentoo.org> -embassy-esim4-1.0.0.ebuild: diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r1.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r1.ebuild index 878d62daebbd..7d5294a78b73 100644 --- a/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r1.ebuild +++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r1.ebuild @@ -1,8 +1,10 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r1.ebuild,v 1.4 2005/06/26 21:03:54 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r1.ebuild,v 1.5 2005/08/07 21:41:10 ribosome Exp $ -inherit embassy-2.10 +EBOV="2.10.0" + +inherit embassy DESCRIPTION="EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA" diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r2.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r2.ebuild new file mode 100644 index 000000000000..eff2b09e4585 --- /dev/null +++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r2.ebuild @@ -0,0 +1,13 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r2.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA" + +RESTRICT="nomirror" + +KEYWORDS="~ppc ~ppc-macos ~x86" diff --git a/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r2 b/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r2 new file mode 100644 index 000000000000..56d3f5373cae --- /dev/null +++ b/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r2 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 835393b3246eb4543a694362c6f335ff ESIM4-1.0.0.tar.gz 384396 diff --git a/sci-biology/embassy-hmmer/ChangeLog b/sci-biology/embassy-hmmer/ChangeLog index 917a9c3bd07b..9a5b7f8ff00b 100644 --- a/sci-biology/embassy-hmmer/ChangeLog +++ b/sci-biology/embassy-hmmer/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/embassy-hmmer # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/ChangeLog,v 1.10 2005/07/30 00:44:02 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/ChangeLog,v 1.11 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-hmmer-2.1.1-r2 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> + embassy-hmmer-2.1.1-r1.ebuild, +embassy-hmmer-2.1.1-r2.ebuild: + Ported 2.1.1-r1 to the improved embassy.eclass. The new version is part of + EMBASSY 3.0.0. 30 Jul 2005; Olivier Fisette <ribosome@gentoo.org> embassy-hmmer-2.1.1-r1.ebuild: diff --git a/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r1.ebuild b/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r1.ebuild index e81439f113bd..beda019c4f86 100644 --- a/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r1.ebuild +++ b/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r1.ebuild @@ -1,15 +1,17 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r1.ebuild,v 1.5 2005/07/30 00:44:03 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r1.ebuild,v 1.6 2005/08/07 21:41:10 ribosome Exp $ -inherit embassy-2.10 +EBOV="2.10.0" + +inherit embassy DESCRIPTION="EMBOSS integrated version of HMMER - Biological sequence analysis with profile HMMs" KEYWORDS="ppc ppc-macos x86" src_install() { - embassy-2.10_src_install + embassy_src_install insinto /usr/include/emboss/hmmer doins src/*.h } diff --git a/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r2.ebuild b/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r2.ebuild new file mode 100644 index 000000000000..bdf7431f5142 --- /dev/null +++ b/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r2.ebuild @@ -0,0 +1,19 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/embassy-hmmer-2.1.1-r2.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="EMBOSS integrated version of HMMER - Biological sequence analysis with profile HMMs" + +RESTRICT="nomirror" + +KEYWORDS="~ppc ~ppc-macos ~x86" + +src_install() { + embassy_src_install + insinto /usr/include/emboss/hmmer + doins src/*.h +} diff --git a/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.1.1-r2 b/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.1.1-r2 new file mode 100644 index 000000000000..a0cf9b554f91 --- /dev/null +++ b/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.1.1-r2 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 382594654e45a7e8d5872b4b1016a494 HMMER-2.1.1.tar.gz 561289 diff --git a/sci-biology/embassy-meme/ChangeLog b/sci-biology/embassy-meme/ChangeLog index 33b69e72d02d..0e682ba41e86 100644 --- a/sci-biology/embassy-meme/ChangeLog +++ b/sci-biology/embassy-meme/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/embassy-meme # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-meme/ChangeLog,v 1.10 2005/07/30 00:41:21 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-meme/ChangeLog,v 1.11 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-meme-2.3.1-r2 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> + embassy-meme-2.3.1-r1.ebuild, +embassy-meme-2.3.1-r2.ebuild: + Ported 2.3.1-r1 to the improved embassy.eclass. The new version is part of + EMBASSY 3.0.0. 30 Jul 2005; Olivier Fisette <ribosome@gentoo.org> embassy-meme-2.3.1-r1.ebuild: diff --git a/sci-biology/embassy-meme/embassy-meme-2.3.1-r1.ebuild b/sci-biology/embassy-meme/embassy-meme-2.3.1-r1.ebuild index e5e4c4d7acc5..b501d36f36e3 100644 --- a/sci-biology/embassy-meme/embassy-meme-2.3.1-r1.ebuild +++ b/sci-biology/embassy-meme/embassy-meme-2.3.1-r1.ebuild @@ -1,15 +1,17 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-meme/embassy-meme-2.3.1-r1.ebuild,v 1.5 2005/07/30 00:41:21 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-meme/embassy-meme-2.3.1-r1.ebuild,v 1.6 2005/08/07 21:41:10 ribosome Exp $ -inherit embassy-2.10 +EBOV="2.10.0" + +inherit embassy DESCRIPTION="EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation" KEYWORDS="ppc ppc-macos x86" src_install() { - embassy-2.10_src_install + embassy_src_install insinto /usr/include/emboss/meme doins src/INCLUDE/*.h } diff --git a/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild b/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild new file mode 100644 index 000000000000..32a62ba6a2bb --- /dev/null +++ b/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild @@ -0,0 +1,19 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-meme/embassy-meme-2.3.1-r2.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation" + +RESTRICT="nomirror" + +KEYWORDS="~ppc ~ppc-macos ~x86" + +src_install() { + embassy_src_install + insinto /usr/include/emboss/meme + doins src/INCLUDE/*.h +} diff --git a/sci-biology/embassy-meme/files/digest-embassy-meme-2.3.1-r2 b/sci-biology/embassy-meme/files/digest-embassy-meme-2.3.1-r2 new file mode 100644 index 000000000000..e50297441194 --- /dev/null +++ b/sci-biology/embassy-meme/files/digest-embassy-meme-2.3.1-r2 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 6f4e516e413582268a34e91fb12e21c3 MEME-2.3.1.tar.gz 423966 diff --git a/sci-biology/embassy-mse/ChangeLog b/sci-biology/embassy-mse/ChangeLog index 765c4eb1d7cb..e49c662c42cc 100644 --- a/sci-biology/embassy-mse/ChangeLog +++ b/sci-biology/embassy-mse/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/embassy-mse # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.10 2005/07/30 00:45:17 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/ChangeLog,v 1.11 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-mse-1.0.0-r2 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> + embassy-mse-1.0.0-r1.ebuild, +embassy-mse-1.0.0-r2.ebuild: + Ported 1.0.0-r1 to the improved embassy.eclass. The new version is part of + EMBASSY 3.0.0. 30 Jul 2005; Olivier Fisette <ribosome@gentoo.org> embassy-mse-1.0.0-r1.ebuild: diff --git a/sci-biology/embassy-mse/embassy-mse-1.0.0-r1.ebuild b/sci-biology/embassy-mse/embassy-mse-1.0.0-r1.ebuild index e0c52486f680..4d73e40ffa9d 100644 --- a/sci-biology/embassy-mse/embassy-mse-1.0.0-r1.ebuild +++ b/sci-biology/embassy-mse/embassy-mse-1.0.0-r1.ebuild @@ -1,15 +1,17 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/embassy-mse-1.0.0-r1.ebuild,v 1.5 2005/07/30 00:45:17 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/embassy-mse-1.0.0-r1.ebuild,v 1.6 2005/08/07 21:41:10 ribosome Exp $ -inherit embassy-2.10 +EBOV="2.10.0" + +inherit embassy DESCRIPTION="EMBOSS integrated version of MSE - Multiple Sequence Editor" KEYWORDS="ppc ppc-macos x86" src_install() { - embassy-2.10_src_install + embassy_src_install insinto /usr/include/emboss/mse doins h/*.h } diff --git a/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild b/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild new file mode 100644 index 000000000000..6c35d99de3ae --- /dev/null +++ b/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild @@ -0,0 +1,19 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/embassy-mse-1.0.0-r2.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="EMBOSS integrated version of MSE - Multiple Sequence Screen Editor" + +KEYWORDS="~ppc ~ppc-macos ~x86" + +RESTRICT="nomirror" + +src_install() { + embassy_src_install + insinto /usr/include/emboss/mse + doins h/*.h +} diff --git a/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r2 b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r2 new file mode 100644 index 000000000000..93bd3f6c5b7f --- /dev/null +++ b/sci-biology/embassy-mse/files/digest-embassy-mse-1.0.0-r2 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 3b9810e870937ec32220b5c9fe7a83cd MSE-1.0.0.tar.gz 415051 diff --git a/sci-biology/embassy-phylip/ChangeLog b/sci-biology/embassy-phylip/ChangeLog index 565e72807add..de05eb7e07a7 100644 --- a/sci-biology/embassy-phylip/ChangeLog +++ b/sci-biology/embassy-phylip/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/embassy-phylip # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/ChangeLog,v 1.9 2005/07/28 02:21:23 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/ChangeLog,v 1.10 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-phylip-3.6b (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> + +embassy-phylip-3.6b.ebuild, embassy-phylip-3.57c-r1.ebuild: + Ported 3.57c-r1 to the improved embassy.eclass. The new version is part of + EMBASSY 3.0.0. 28 Jul 2005; Olivier Fisette <ribosome@gentoo.org> -embassy-phylip-3.57c.ebuild: diff --git a/sci-biology/embassy-phylip/embassy-phylip-3.57c-r1.ebuild b/sci-biology/embassy-phylip/embassy-phylip-3.57c-r1.ebuild index b24d62b1e104..ac51130bd2e8 100644 --- a/sci-biology/embassy-phylip/embassy-phylip-3.57c-r1.ebuild +++ b/sci-biology/embassy-phylip/embassy-phylip-3.57c-r1.ebuild @@ -1,8 +1,10 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/embassy-phylip-3.57c-r1.ebuild,v 1.4 2005/06/26 21:08:09 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/embassy-phylip-3.57c-r1.ebuild,v 1.5 2005/08/07 21:41:10 ribosome Exp $ -inherit embassy-2.10 +EBOV="2.10.0" + +inherit embassy DESCRIPTION="EMBOSS integrated version of the PHYLogeny Inference Package" LICENSE="freedist" diff --git a/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild b/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild new file mode 100644 index 000000000000..4e4460d14deb --- /dev/null +++ b/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild @@ -0,0 +1,12 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-phylip/embassy-phylip-3.6b.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="EMBOSS integrated version of the PHYLogeny Inference Package" +LICENSE="freedist" + +KEYWORDS="~ppc ~ppc-macos ~x86" diff --git a/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b b/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b new file mode 100644 index 000000000000..75a4eb235e54 --- /dev/null +++ b/sci-biology/embassy-phylip/files/digest-embassy-phylip-3.6b @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 94c69de9dbba1170c61a52f7b9275ae5 PHYLIP-3.6b.tar.gz 1136543 diff --git a/sci-biology/embassy-signature/ChangeLog b/sci-biology/embassy-signature/ChangeLog new file mode 100644 index 000000000000..7f831e6e9e60 --- /dev/null +++ b/sci-biology/embassy-signature/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/embassy-signature +# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/ChangeLog,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-signature-0.1.0 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +embassy-signature-0.1.0.ebuild: + New import. This package is part of the EMBASSY 3.0.0 distribution. + diff --git a/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild b/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild new file mode 100644 index 000000000000..18b5b62cc01a --- /dev/null +++ b/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild @@ -0,0 +1,11 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-signature/embassy-signature-0.1.0.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="Protein signature add-on package for EMBOSS" + +KEYWORDS="~ppc ~ppc-macos ~x86" diff --git a/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0 b/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0 new file mode 100644 index 000000000000..724f198dc154 --- /dev/null +++ b/sci-biology/embassy-signature/files/digest-embassy-signature-0.1.0 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 1e30e12048609a468b7b4d4affb177cf SIGNATURE-0.1.0.tar.gz 400125 diff --git a/sci-biology/embassy-signature/metadata.xml b/sci-biology/embassy-signature/metadata.xml new file mode 100644 index 000000000000..e9391a41a838 --- /dev/null +++ b/sci-biology/embassy-signature/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> +</pkgmetadata> diff --git a/sci-biology/embassy-structure/ChangeLog b/sci-biology/embassy-structure/ChangeLog new file mode 100644 index 000000000000..ef07e15fcb25 --- /dev/null +++ b/sci-biology/embassy-structure/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/embassy-structure +# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-structure/ChangeLog,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-structure-0.1.0 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +embassy-structure-0.1.0.ebuild: + New import. This package is part of the EMBASSY 3.0.0 distribution. + diff --git a/sci-biology/embassy-structure/embassy-structure-0.1.0.ebuild b/sci-biology/embassy-structure/embassy-structure-0.1.0.ebuild new file mode 100644 index 000000000000..dd80e9292272 --- /dev/null +++ b/sci-biology/embassy-structure/embassy-structure-0.1.0.ebuild @@ -0,0 +1,11 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-structure/embassy-structure-0.1.0.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +DESCRIPTION="Protein structure add-on package for EMBOSS" + +KEYWORDS="~ppc ~ppc-macos ~x86" diff --git a/sci-biology/embassy-structure/files/digest-embassy-structure-0.1.0 b/sci-biology/embassy-structure/files/digest-embassy-structure-0.1.0 new file mode 100644 index 000000000000..0ed7c3515c67 --- /dev/null +++ b/sci-biology/embassy-structure/files/digest-embassy-structure-0.1.0 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 6efc35eb2855738252e0537198f5225d STRUCTURE-0.1.0.tar.gz 362563 diff --git a/sci-biology/embassy-structure/metadata.xml b/sci-biology/embassy-structure/metadata.xml new file mode 100644 index 000000000000..e9391a41a838 --- /dev/null +++ b/sci-biology/embassy-structure/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> +</pkgmetadata> diff --git a/sci-biology/embassy-topo/ChangeLog b/sci-biology/embassy-topo/ChangeLog index 8f57777d9862..cbb281d79149 100644 --- a/sci-biology/embassy-topo/ChangeLog +++ b/sci-biology/embassy-topo/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/embassy-topo # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-topo/ChangeLog,v 1.9 2005/07/28 02:22:30 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-topo/ChangeLog,v 1.10 2005/08/07 21:41:11 ribosome Exp $ + +*embassy-topo-1.0.0-r2 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> + embassy-topo-1.0.0-r1.ebuild, +embassy-topo-1.0.0-r2.ebuild: + Ported 1.0.0-r1 to the improved embassy.eclass. The new version is part of + EMBASSY 3.0.0. 28 Jul 2005; Olivier Fisette <ribosome@gentoo.org> -embassy-topo-1.0.0.ebuild: diff --git a/sci-biology/embassy-topo/embassy-topo-1.0.0-r1.ebuild b/sci-biology/embassy-topo/embassy-topo-1.0.0-r1.ebuild index 47667e961f3d..8c4f67b9c96c 100644 --- a/sci-biology/embassy-topo/embassy-topo-1.0.0-r1.ebuild +++ b/sci-biology/embassy-topo/embassy-topo-1.0.0-r1.ebuild @@ -1,8 +1,10 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-topo/embassy-topo-1.0.0-r1.ebuild,v 1.4 2005/06/26 21:09:01 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-topo/embassy-topo-1.0.0-r1.ebuild,v 1.5 2005/08/07 21:41:11 ribosome Exp $ -inherit embassy-2.10 +EBOV="2.10.0" + +inherit embassy DESCRIPTION="EMBOSS integrated version of TOPO - Transmembrane protein display" diff --git a/sci-biology/embassy-topo/embassy-topo-1.0.0-r2.ebuild b/sci-biology/embassy-topo/embassy-topo-1.0.0-r2.ebuild new file mode 100644 index 000000000000..e78949fffc10 --- /dev/null +++ b/sci-biology/embassy-topo/embassy-topo-1.0.0-r2.ebuild @@ -0,0 +1,13 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-topo/embassy-topo-1.0.0-r2.ebuild,v 1.1 2005/08/07 21:41:11 ribosome Exp $ + +EBOV="3.0.0" + +inherit embassy + +RESTRICT="nomirror" + +DESCRIPTION="EMBOSS integrated version of TOPO - Transmembrane protein display" + +KEYWORDS="~ppc ~ppc-macos ~x86" diff --git a/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0-r2 b/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0-r2 new file mode 100644 index 000000000000..86fc2a585155 --- /dev/null +++ b/sci-biology/embassy-topo/files/digest-embassy-topo-1.0.0-r2 @@ -0,0 +1,2 @@ +MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908 +MD5 7b3355570ba36f7daf57dcbc717215ce TOPO-1.0.0.tar.gz 351796 diff --git a/sci-biology/embassy/ChangeLog b/sci-biology/embassy/ChangeLog index e75dfb6d8419..55497607486e 100644 --- a/sci-biology/embassy/ChangeLog +++ b/sci-biology/embassy/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/embassy # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy/ChangeLog,v 1.13 2005/07/28 02:11:17 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy/ChangeLog,v 1.14 2005/08/07 21:41:10 ribosome Exp $ + +*embassy-3.0.0 (07 Aug 2005) + + 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> +embassy-3.0.0.ebuild: + New version. This meta-package is for EMBASSY software distributed with + EMBOSS 3.0.0. 28 Jul 2005; Olivier Fisette <ribosome@gentoo.org> -embassy-2.9.0.ebuild: Removed old version. diff --git a/sci-biology/embassy/embassy-3.0.0.ebuild b/sci-biology/embassy/embassy-3.0.0.ebuild new file mode 100644 index 000000000000..f51987c8b6d2 --- /dev/null +++ b/sci-biology/embassy/embassy-3.0.0.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy/embassy-3.0.0.ebuild,v 1.1 2005/08/07 21:41:10 ribosome Exp $ + +DESCRIPTION="A meta-package for installing all EMBASSY packages (EMBOSS add-ons)" +HOMEPAGE="http://www.emboss.org/" +SRC_URI="" +LICENSE="GPL-2 freedist" + +SLOT="0" +KEYWORDS="~ppc ~ppc-macos ~x86" +IUSE="" + +# IUSE="no-conflict" +# In the future, I plan to integrate packages such as the standalone meme, which +# would conflict with the corresponding embassy-meme package. Conflicting +# EMBASSY packages will be marked as blockers of the standalone version (and vice +# versa), and the no-conflict USE flag will make it easy to install all EMBASSY +# packages except the conflictual ones. + +RDEPEND="!<sci-biology/emboss-3.0.0 + !sci-biology/embassy-construct + =sci-biology/emboss-3.0.0* + =sci-biology/embassy-domainatrix-0.1.0 + =sci-biology/embassy-domalign-0.1.0 + =sci-biology/embassy-domsearch-0.1.0 + =sci-biology/embassy-signature-0.1.0 + =sci-biology/embassy-structure-0.1.0 + =sci-biology/embassy-emnu-1.05-r2 + =sci-biology/embassy-esim4-1.0.0-r2 + =sci-biology/embassy-hmmer-2.1.1-r2 + =sci-biology/embassy-meme-2.3.1-r2 + =sci-biology/embassy-mse-1.0.0-r2 + =sci-biology/embassy-phylip-3.6b + =sci-biology/embassy-topo-1.0.0-r2" diff --git a/sci-biology/embassy/files/digest-embassy-3.0.0 b/sci-biology/embassy/files/digest-embassy-3.0.0 new file mode 100644 index 000000000000..e69de29bb2d1 --- /dev/null +++ b/sci-biology/embassy/files/digest-embassy-3.0.0 |