diff options
| -rw-r--r-- | sci-chemistry/vmd/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-chemistry/vmd/Manifest | 15 | ||||
| -rw-r--r-- | sci-chemistry/vmd/files/digest-vmd-1.8.3 | 3 | ||||
| -rw-r--r-- | sci-chemistry/vmd/files/vmd-1.8.3-config-gentoo.patch | 73 | ||||
| -rw-r--r-- | sci-chemistry/vmd/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-chemistry/vmd/vmd-1.8.3.ebuild | 138 |
6 files changed, 248 insertions, 0 deletions
diff --git a/sci-chemistry/vmd/ChangeLog b/sci-chemistry/vmd/ChangeLog new file mode 100644 index 000000000000..9bcc3f3b3b2e --- /dev/null +++ b/sci-chemistry/vmd/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/vmd +# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.1 2006/02/10 15:33:08 markusle Exp $ + +*vmd-1.8.3 (10 Feb 2006) + + 10 Feb 2006; Markus Dittrich <markusle@gentoo.org> + +files/vmd-1.8.3-config-gentoo.patch, +metadata.xml, +vmd-1.8.3.ebuild: + Initial import. + diff --git a/sci-chemistry/vmd/Manifest b/sci-chemistry/vmd/Manifest new file mode 100644 index 000000000000..3a3b6d69eabb --- /dev/null +++ b/sci-chemistry/vmd/Manifest @@ -0,0 +1,15 @@ +MD5 1206c48a2d3bc4f2d3475bbce47bd469 ChangeLog 290 +RMD160 73525344c19588906d003b30423b761b92bfcf26 ChangeLog 290 +SHA256 65c369e1a0c1265f1e83f51dc5b860db8e2ca8b901362eb7a659a5a3b2b129a5 ChangeLog 290 +MD5 369e1a4fc4a190880b7bcd1847da843f files/digest-vmd-1.8.3 244 +RMD160 99396b8dda8d7fc4a45c128cde3773103be4c5a4 files/digest-vmd-1.8.3 244 +SHA256 afb2b7701f35aeaedd2191351e44ba399d7c2b449edfd8b3d9adac47fd266734 files/digest-vmd-1.8.3 244 +MD5 c2f7407b24ab8fee80f913a2b31e79f5 files/vmd-1.8.3-config-gentoo.patch 2849 +RMD160 6bfdf7aa6f19839578b9dd08833f5af9a934514a files/vmd-1.8.3-config-gentoo.patch 2849 +SHA256 ee812af9c130d93b795c3f6967a1cc84a03fd56c16fcf9308636c3285a86ed73 files/vmd-1.8.3-config-gentoo.patch 2849 +MD5 df166a2ae1cb64196abc394d4fa522ed metadata.xml 272 +RMD160 42331a21c1e7a31cfe105f705fe3073de14b6b14 metadata.xml 272 +SHA256 36ae23839abbf283daf51b7f9585af067c0504484f5ca61e2f08113912becb77 metadata.xml 272 +MD5 2b69ecef38ecc334c3a688de2feb96ed vmd-1.8.3.ebuild 3356 +RMD160 ec3cc716ab8e95228d2879aef14e6e3e5d43ad3e vmd-1.8.3.ebuild 3356 +SHA256 297976234eadd7ab620bd5261fe348fb1ce5b91eb0a2bd04813827e38943b39c vmd-1.8.3.ebuild 3356 diff --git a/sci-chemistry/vmd/files/digest-vmd-1.8.3 b/sci-chemistry/vmd/files/digest-vmd-1.8.3 new file mode 100644 index 000000000000..3a9d77d8371e --- /dev/null +++ b/sci-chemistry/vmd/files/digest-vmd-1.8.3 @@ -0,0 +1,3 @@ +MD5 8fb3fa55a54bcc3e41dbbd53c1c2cc59 vmd-1.8.3.src.tar.gz 8590337 +RMD160 4ad1b58721005ef85f580f437c032c28f6d786f1 vmd-1.8.3.src.tar.gz 8590337 +SHA256 36fb014004a765e54bbcd6608ef8738c808355268fd05dce618bc498d1f29c3e vmd-1.8.3.src.tar.gz 8590337 diff --git a/sci-chemistry/vmd/files/vmd-1.8.3-config-gentoo.patch b/sci-chemistry/vmd/files/vmd-1.8.3-config-gentoo.patch new file mode 100644 index 000000000000..879e00f9b678 --- /dev/null +++ b/sci-chemistry/vmd/files/vmd-1.8.3-config-gentoo.patch @@ -0,0 +1,73 @@ +diff -Naur vmd-1.8.3/configure vmd-1.8.3-patched/configure +--- vmd-1.8.3/configure 2005-02-16 05:44:22.000000000 +0000 ++++ vmd-1.8.3-patched/configure 2005-12-18 20:49:49.000000000 +0000 +@@ -13,10 +13,10 @@ + $install_name = "vmd"; + + # Directory where VMD startup script is installed, should be in users' paths. +-$install_bin_dir="/usr/local/bin"; ++$install_bin_dir="gentoo-bindir"; + + # Directory where VMD files and executables are installed +-$install_library_dir="/usr/local/lib/$install_name"; ++$install_library_dir="gentoo-libdir/$install_name"; + + + # optionally override hard-coded defaults above with environment variables +@@ -371,8 +371,8 @@ + + ################ Plugin options + # +-$plugin_dir = "../plugins"; +-$molfile_dir = "$plugin_dir/$config_arch/molfile"; ++$plugin_dir = "gentoo-plugindir"; ++$molfile_dir = "$plugin_dir/compile/lib_LINUX/molfile"; + $plugin_include = "-I$plugin_dir/include -I$molfile_dir"; + $plugin_library = "-L$molfile_dir"; + $plugin_libs = "-lmolfile_plugin"; +@@ -472,8 +472,8 @@ + ################ FLTK GUI + $fltk_defines = "-DVMDGUI -DVMDFLTK"; + $fltk_dir = "$vmd_library_dir/fltk"; +-$fltk_include = "-I$fltk_dir/include"; +-$fltk_library = "-L$fltk_dir/$config_arch"; ++$fltk_include = "-Igentoo-fltk-include"; ++$fltk_library = "-Lgentoo-fltk-libs"; + $fltk_libs = "-lfltk -lX11"; + #@fltk_cc = ('forms_ui.c'); + @fltk_ccpp = ( 'ColorFltkMenu.C', +@@ -805,9 +805,9 @@ + ################### + $python_defines = "-DVMDPYTHON"; + $python_dir = "$vmd_library_dir/python"; +-$python_include = "-I$python_dir/lib_$config_arch/include/python2.2"; +-$python_library = "-L$python_dir/lib_$config_arch/lib/python2.2/config"; +-$python_libs = "-lpython2.2 -lpthread"; ++$python_include = "-Igentoo-python-include"; ++$python_library = "-Lgentoo-python-lib"; ++$python_libs = "-lgentoo-python-link -lpthread"; + @python_h = ('PythonTextInterp.h', + 'VMDTkinterMenu.h', + 'py_commands.h', +@@ -1335,8 +1335,8 @@ + $opengl_libs = "-lGL -lGLU"; + # $opengl_libs = "-L/usr/X11R6/lib -lGL -lGLU -lXext -lX11"; + +- $arch_cc = "gcc"; +- $arch_ccpp = "g++"; ++ $arch_cc = "gentoo-gcc"; ++ $arch_ccpp = "gentoo-g++"; + # test hack to statically link libstd++ + # $arch_ccpp = "gcc"; + $arch_depend_flag = "-MM"; +@@ -1345,8 +1345,8 @@ + $arch_shcppopts = "-fPIC"; + $arch_shldopts = ""; + +- $arch_opt_flag = "-fno-for-scope -Wall -Wno-deprecated -O3 -march=i586 -fomit-frame-pointer"; +- $arch_copts = "-Wall -Wno-deprecated -O3 -march=i586 -fomit-frame-pointer"; ++ $arch_opt_flag = "gentoo-cflags"; ++ $arch_copts = "gentoo-cflags"; + + if ($config_static) { + $arch_lopts = "-static"; diff --git a/sci-chemistry/vmd/metadata.xml b/sci-chemistry/vmd/metadata.xml new file mode 100644 index 000000000000..f86602893b1c --- /dev/null +++ b/sci-chemistry/vmd/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>markusle@gentoo.org</email> + <name>Markus Dittrich</name> + </maintainer> + <herd>sci</herd> +</pkgmetadata> diff --git a/sci-chemistry/vmd/vmd-1.8.3.ebuild b/sci-chemistry/vmd/vmd-1.8.3.ebuild new file mode 100644 index 000000000000..29add240fbda --- /dev/null +++ b/sci-chemistry/vmd/vmd-1.8.3.ebuild @@ -0,0 +1,138 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.3.ebuild,v 1.1 2006/02/10 15:33:08 markusle Exp $ + +inherit eutils toolchain-funcs python + +DESCRIPTION="Visual Molecular Dynamics" +LICENSE="vmd" +HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/" +SRC_URI="${P}.src.tar.gz" + +SLOT="0" +KEYWORDS="~x86" +IUSE="hardened" + +RESTRICT="fetch" + +DEPEND="app-shells/tcsh + || ( x11-libs/libXft virtual/x11 ) + virtual/opengl + x11-libs/fltk + =dev-lang/tcl-8.4* + =dev-lang/tk-8.4* + >=dev-lang/python-2.3 + hardened? ( sys-apps/paxctl )" + + +VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD" + +pkg_nofetch() { + echo + einfo "Please download ${SRC_URI} from" + einfo "${VMD_DOWNLOAD}" + einfo "after agreeing to the license and then move it to " + einfo "${DISTDIR}" + echo +} + +src_unpack() { + unpack ${A} + + # apply LINUX-arch patches to gamess makesfiles + epatch "${FILESDIR}"/${P}-config-gentoo.patch + + + # prepare the plugins + + cd "${WORKDIR}"/plugins + + sed -e "s/CC = gcc/CC = $(tc-getCC)/" \ + -e "s/CXX = g++/CXX = $(tc-getCXX)/" \ + -e "s/COPTO = -o /COPTO = -fPIC -o /" \ + -e "s/LOPTO = -o /LOPTO = -fPIC -o /" \ + -e "s/CCFLAGS = -O2 -Wall/CCFLAGS = ${CFLAGS}/" \ + -e "s/CXXFLAGS = -O2 -Wall/CXXFLAGS = ${CXXFLAGS}/" \ + -i Make-arch || die "Failed to set up plugins Makefile" + + # prepare vmd itself + + cd "${S}" + + sed -e "s:gentoo-bindir:${D}/usr/bin:" \ + -e "s:gentoo-libdir:${D}/usr/$(get_libdir):" \ + -i configure || die "failed to adjust install paths" + + + sed -e "s:gentoo-gcc:$(tc-getCC):" \ + -e "s:gentoo-g++:$(tc-getCXX):" \ + -e "s:gentoo-cflags:${CFLAGS}:" \ + -i configure || die "Failed to adjust C compiler/flags" + + + sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \ + -i configure || die "Failed to set up linking to plugin files" + + sed -e "s:gentoo-fltk-include:/usr/include/fltk-1.1:" \ + -e "s:gentoo-fltk-libs:/usr/$(get_libdir)/fltk-1.1:" \ + -i configure || die "failed setting up fltk" + + + # get installed python version + python_version + local PY="python${PYVER}" + + sed -e "s:gentoo-python-include:/usr/include/${PY}:" \ + -e "s:gentoo-python-lib:/usr/$(get_libdir)/${PY}:" \ + -e "s:gentoo-python-link:${PY}:" \ + -i configure || die "failed setting up python" + + + local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON" + + rm -f configure.options && echo $myconfig >> configure.options + + ./configure &> /dev/null || die "failed to configure" + +} + +src_compile() { + # build plugins + cd "${WORKDIR}"/plugins + make LINUX || die "failed to build plugins" + + # build vmd + cd "${S}"/src + make || die "failed to build vmd" +} + +src_install() { + # install plugins + cd "${WORKDIR}"/plugins + PLUGINDIR=${D}/usr/$(get_libdir)/${PN}/plugins make distrib || \ + die "failed to install plugins" + + # install vmd + cd "${S}"/src + make install || die "failed to install vmd" + + # install docs + cd "${S}" + dodoc Announcement README doc/ig.pdf doc/ug.pdf + + # remove some of the things we don't want and need in + # /usr/lib + cd "${D}"/usr/$(get_libdir)/vmd + rm -fr doc README Announcement LICENSE || \ + die "failed to clean up /usr/lib/vmd directory" + + # adjust path in vmd wrapper + sed -e "s:${D}::" -i "${D}"/usr/bin/${PN} \ + || die "failed to set up vmd wrapper script" + + # adjust paxctl settings on hardened systems + if use hardened; then + /sbin/paxctl -pemrxs ${D}/usr/$(get_libdir)/${PN}/${PN}_LINUX + fi +} + |