Removing package masked sci-biology/emboss-kaptain

5 files changed, 0 insertions, 153 deletions

diff --git a/sci-biology/emboss-kaptain/ChangeLog b/sci-biology/emboss-kaptain/ChangeLog
deleted file mode 100644
index ff64b5562bfb..000000000000
--- a/sci-biology/emboss-kaptain/ChangeLog
+++ /dev/null
@@ -1,45 +0,0 @@
-# ChangeLog for sci-biology/emboss-kaptain
-# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss-kaptain/ChangeLog,v 1.7 2006/09/13 04:18:22 ribosome Exp $
-
-  13 Sep 2006; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
-  I will no longer maintain this package.
-
-*emboss-kaptain-0.97-r2 (12 Sep 2006)
-
-  12 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
-  -emboss-kaptain-0.97-r1.ebuild, +emboss-kaptain-0.97-r2.ebuild:
-  Removing older version, as it is broken with our current stable EMBOSS
-  setup. Adding a fixed version for EMBOSS 4.0.0, package masked as there are
-  a number of issues with PHYLIP programs (and probably others).
-
-  10 May 2005; Olivier Fisette <ribosome@gentoo.org>
-  -emboss-kaptain-0.97.ebuild:
-  Removed buggy version.
-
-*emboss-kaptain-0.97-r1 (10 May 2005)
-
-  10 May 2005; Olivier Fisette <ribosome@gentoo.org>
-  +emboss-kaptain-0.97-r1.ebuild:
-  Fixed bug #92010 (by replacing nc by neditc in the grammar files).
-
-  20 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
-  emboss-kaptain-0.97.ebuild:
-  Added to x86.
-
-*emboss-kaptain-0.97 (23 Dec 2004)
-
-  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
-  +emboss-kaptain-0.97.ebuild:
-  Moved from app-sci/emboss-kaptain to sci-biology/emboss-kaptain.
-
-  07 Nov 2004; Olivier Fisette <ribosome@gentoo.org>
-  emboss-kaptain-0.97.ebuild:
-  Changed dependency since "app-misc/kaptain" was moved to "kde-misc/kaptain".
-
-*emboss-kaptain-0.97 (30 Oct 2004)
-
-  30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
-  +emboss-kaptain-0.97.ebuild:
-  Initial import.
-
diff --git a/sci-biology/emboss-kaptain/Manifest b/sci-biology/emboss-kaptain/Manifest
deleted file mode 100644
index 26de39303977..000000000000
--- a/sci-biology/emboss-kaptain/Manifest
+++ /dev/null
@@ -1,16 +0,0 @@
-DIST EMBOSS.kaptns_0.97.tar.gz 149263 RMD160 638c619bcc96bf093089c62d4d121636099711ee SHA1 8bb46bd72f3280ca8d5dbb0d27f06563fb5ade22 SHA256 53f08edfbd2b924657db69d66458b5ae07226e1570864680fc0d4257cd71a656
-EBUILD emboss-kaptain-0.97-r2.ebuild 2993 RMD160 ddb8d5cf62562c6f9ad1ec9a1754465f164e269b SHA1 a633e4fb0d8a4cee7b6680979a308d713a2cae10 SHA256 0a1b4e694293c89e9fd1acc091043cdf6189fe970aead09917b9e24f45bf824b
-MD5 5e3896759c00a523986e20217d789a2c emboss-kaptain-0.97-r2.ebuild 2993
-RMD160 ddb8d5cf62562c6f9ad1ec9a1754465f164e269b emboss-kaptain-0.97-r2.ebuild 2993
-SHA256 0a1b4e694293c89e9fd1acc091043cdf6189fe970aead09917b9e24f45bf824b emboss-kaptain-0.97-r2.ebuild 2993
-MISC ChangeLog 1638 RMD160 0eba8eb3532d9245cc4f61d326a6cffc296cb214 SHA1 d28c9db5b2a9013c26bc3fd2439ab14f3e1c257d SHA256 109bb5b5b0714928001ba277ea12d6d0b1cc0189ea2c54b63d786919b220e9e1
-MD5 c5add24c151b95b5f32535b07abcd1fb ChangeLog 1638
-RMD160 0eba8eb3532d9245cc4f61d326a6cffc296cb214 ChangeLog 1638
-SHA256 109bb5b5b0714928001ba277ea12d6d0b1cc0189ea2c54b63d786919b220e9e1 ChangeLog 1638
-MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
-MD5 aec0225cc3c4bc9490275e897849b449 metadata.xml 165
-RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 metadata.xml 165
-SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 metadata.xml 165
-MD5 a7ea5060193af38556e748d1883ca15a files/digest-emboss-kaptain-0.97-r2 256
-RMD160 e29640dd12c3409271538b69eab8767a5da8c672 files/digest-emboss-kaptain-0.97-r2 256
-SHA256 ce01f40d1566504d883e4612719f9db5dc4af23e0bdc32eaf801dec88a683721 files/digest-emboss-kaptain-0.97-r2 256
diff --git a/sci-biology/emboss-kaptain/emboss-kaptain-0.97-r2.ebuild b/sci-biology/emboss-kaptain/emboss-kaptain-0.97-r2.ebuild
deleted file mode 100644
index f37aa4549263..000000000000
--- a/sci-biology/emboss-kaptain/emboss-kaptain-0.97-r2.ebuild
+++ /dev/null
@@ -1,84 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss-kaptain/emboss-kaptain-0.97-r2.ebuild,v 1.1 2006/09/12 04:27:53 ribosome Exp $
-
-DESCRIPTION="Graphical interfaces for EMBOSS and EMBASSY programs"
-HOMEPAGE="http://userpage.fu-berlin.de/~sgmd/"
-SRC_URI="http://genetik.fu-berlin.de/sgmd/EMBOSS.kaptns_${PV}.tar.gz"
-LICENSE="GPL-1"
-
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-S="${WORKDIR}/EMBOSS.kaptns_${PV}"
-
-DEPEND="kde-misc/kaptain
-	app-editors/nedit
-	~sci-biology/emboss-4.0.0
-	~sci-biology/embassy-phylipnew-3.6b
-	~sci-biology/embassy-domainatrix-0.1.0"
-
-src_compile() {
-	einfo "Fixing nedit references:"
-	for i in *.kaptn; do
-		echo -e "\t${i}"
-		sed -e 's/nc -noask/neditc -noask/' \
-				-e 's/nc -svrname/neditc -svrname/' -i ${i} || \
-				die "Failed setting correct nedit executable in ${i}."
-	done
-
-	einfo "Fixing PHYLIP references:"
-	for i in clique consense contml contrast dnacomp dnadist dnainvar dnaml dnamlk \
-			dnapars dnapenny dollop dolpenny factor fitch gendist kitsch mix \
-			neighbor penny protdist protpars restml seqboot ; do
-		echo -e "\t${i}"
-		mv e${i}.kaptn f${i}.kaptn || \
-				die "Failed to rename PHYLIP grammar rules for ${i}."
-		sed -e "s/e${i}/f${i}/g" -e "s/E${i}/F${i}/g" -i f${i}.kaptn || \
-				die "Failed to patch PHYLIP grammar rules for ${i}."
-		mv EMBOSS/Phylip/e${i}.desktop EMBOSS/Phylip/f${i}.desktop || \
-				die "Failed to rename PHYLIP desktop file for ${i}."
-		sed -e "s/e${i}/f${i}/g" -e "s/E${i}/F${i}/g" -i EMBOSS/Phylip/f${i}.desktop \
-				|| die "Failed to patch PHYLIP desktop file for ${i}."
-	done
-
-	einfo "Fixing drawtree references:"
-	for i in clique consense contml dnacomp dnaml dnamlk dnapars dnapenny dollop \
-			dolpenny fitch kitsch mix neighbor penny protpars restml; do
-		echo -e "\t${i}"
-		sed -e "s/drawtree/treeprint/g" -i f${i}.kaptn || \
-				die "Failed to fix drawtree refenrece in ${i}."
-	done
-
-	einfo "Fixing desktop files:"
-	cd EMBOSS
-	for i in *; do
-		if [ -d "${i}" ]; then
-			echo -e "\t${i}"
-			cd "${S}"/EMBOSS/"${i}"
-			for j in *.desktop; do
-				sed -i -e 's%Exec=%Exec=kaptain /usr/share/emboss-kaptain/%' ${j} || \
-						die "Failed setting shared files path in ${i}/${j}."
-			done
-			cd "${S}"/EMBOSS
-		fi
-	done
-	echo -e "\tDomainatrix"
-	cd "${S}"/Domainatrix/Domainatrix
-	for i in *.desktop; do
-		sed -i -e 's%Exec=%Exec=kaptain /usr/share/emboss-kaptain/%' ${i} || \
-				die "Failed setting shared files path in Domainatrix/${i}."
-	done
-}
-
-src_install() {
-	exeinto /usr/share/${PN}
-	doexe *.kaptn || die "Failed to install grammar rules."
-	doexe Domainatrix/*.kaptn || die "Failed to install Domainatrix grammar rules."
-	mkdir -p "${D}"/usr/share/applnk/EMBOSS/Domainatrix
-	cp -r EMBOSS/* ${D}/usr/share/applnk/EMBOSS || \
-			die "Failed to install desktop files."
-	cp -r Domainatrix/Domainatrix/* ${D}/usr/share/applnk/EMBOSS/Domainatrix || \
-			die "Failed to install Domainatrix desktop files."
-}
diff --git a/sci-biology/emboss-kaptain/files/digest-emboss-kaptain-0.97-r2 b/sci-biology/emboss-kaptain/files/digest-emboss-kaptain-0.97-r2
deleted file mode 100644
index e3c5e185b839..000000000000
--- a/sci-biology/emboss-kaptain/files/digest-emboss-kaptain-0.97-r2
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 ebd469f76629503ced882811e8b4568b EMBOSS.kaptns_0.97.tar.gz 149263
-RMD160 638c619bcc96bf093089c62d4d121636099711ee EMBOSS.kaptns_0.97.tar.gz 149263
-SHA256 53f08edfbd2b924657db69d66458b5ae07226e1570864680fc0d4257cd71a656 EMBOSS.kaptns_0.97.tar.gz 149263
diff --git a/sci-biology/emboss-kaptain/metadata.xml b/sci-biology/emboss-kaptain/metadata.xml
deleted file mode 100644
index d4648212cbad..000000000000
--- a/sci-biology/emboss-kaptain/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci-biology</herd>
-</pkgmetadata>