Initial import (bug #112769)

(Portage version: 2.0.51.22-r3)

5 files changed, 65 insertions, 0 deletions

diff --git a/sci-biology/clustalw-mpi/ChangeLog b/sci-biology/clustalw-mpi/ChangeLog
new file mode 100644
index 000000000000..e24649b67f85
--- /dev/null
+++ b/sci-biology/clustalw-mpi/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/clustalw-mpi
+# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw-mpi/ChangeLog,v 1.1 2005/11/19 17:24:29 ribosome Exp $
+
+*clustalw-mpi-0.13 (19 Nov 2005)
+
+  19 Nov 2005; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +clustalw-mpi-0.13.ebuild:
+  Initial import. Original ebuild submitted by Brady Catherman
+  <bradyc@uidaho.edu> (bug #112769).
+
diff --git a/sci-biology/clustalw-mpi/Manifest b/sci-biology/clustalw-mpi/Manifest
new file mode 100644
index 000000000000..e43494ef7bda
--- /dev/null
+++ b/sci-biology/clustalw-mpi/Manifest
@@ -0,0 +1,2 @@
+MD5 a1c7305f2c74ffa5dc4544e69129b74b clustalw-mpi-0.13.ebuild 1098
+MD5 a3271acbd5ef3270f2823a55c22dc7cc files/digest-clustalw-mpi-0.13 69
diff --git a/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild b/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild
new file mode 100644
index 000000000000..6888d8d985e8
--- /dev/null
+++ b/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw-mpi/clustalw-mpi-0.13.ebuild,v 1.1 2005/11/19 17:24:29 ribosome Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="A parallel (MPI) implemention of the Clustal-W general purpose multiple alignment program"
+LICENSE="public-domain"
+HOMEPAGE="http://web.bii.a-star.edu.sg/~kuobin/clustalw-mpi/"
+SRC_URI="http://web.bii.a-star.edu.sg/~kuobin/${PN}/${P}.tar.gz"
+
+SLOT="0"
+IUSE="mpi_njtree static_pairalign"
+KEYWORDS="~x86"
+
+DEPEND="virtual/libc
+	virtual/mpi"
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	sed -e "s/CFLAGS  = -c -O3/CFLAGS = -c ${CFLAGS}/" \
+		-e "s/LFLAGS	= -lm/LFLAGS = -lm ${CFLAGS}/" -i Makefile || \
+			die "Failed to apply CFLAGS."
+	if use mpi_njtree; then
+		sed -e "s/TREES_FLAG/#TREES_FLAG/" -i Makefile || \
+			die "Failed to configure MPI code for NJ trees."
+	fi
+	if use static_pairalign; then
+		sed -e "s/DDYNAMIC_SCHEDULING/DSTATIC_SCHEDULING/" -i Makefile || \
+			die "Failed to configure static scheduling for pair alignments."
+	fi
+}
+
+src_compile() {
+	emake || die
+}
+
+src_install() {
+	dobin clustalw-mpi || die
+	newdoc README.${PN} README || die
+}
diff --git a/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13 b/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13
new file mode 100644
index 000000000000..66be8b19cfe9
--- /dev/null
+++ b/sci-biology/clustalw-mpi/files/digest-clustalw-mpi-0.13
@@ -0,0 +1 @@
+MD5 f4c24336764eff6be73322bfc7167f16 clustalw-mpi-0.13.tar.gz 154911
diff --git a/sci-biology/clustalw-mpi/metadata.xml b/sci-biology/clustalw-mpi/metadata.xml
new file mode 100644
index 000000000000..e9391a41a838
--- /dev/null
+++ b/sci-biology/clustalw-mpi/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+</pkgmetadata>