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| author |   Justin Lecher <jlec@gentoo.org> | 2012-06-25 18:50:32 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2012-06-25 18:50:32 +0000 |
| commit | 9ec1dcd40e27ce2761c896db33e4de02f3ee3aea (patch) | |
| tree | d651e538b299a24d76583a40b1b3cbcb52660251 /sci-biology/vaal/vaal-1.6.ebuild | |
| parent | Remove old. (diff) | |
| download | gentoo-2-9ec1dcd40e27ce2761c896db33e4de02f3ee3aea.tar.gz gentoo-2-9ec1dcd40e27ce2761c896db33e4de02f3ee3aea.tar.bz2 gentoo-2-9ec1dcd40e27ce2761c896db33e4de02f3ee3aea.zip | |
sci-biology/vaal: Drop old, #309127; Handle openmp, don't install license
(Portage version: 2.2.0_alpha112/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/vaal/vaal-1.6.ebuild')
| -rw-r--r-- | sci-biology/vaal/vaal-1.6.ebuild | 38 |
1 files changed, 24 insertions, 14 deletions
diff --git a/sci-biology/vaal/vaal-1.6.ebuild b/sci-biology/vaal/vaal-1.6.ebuild index f836a0393ec9..719765aec7ba 100644 --- a/sci-biology/vaal/vaal-1.6.ebuild +++ b/sci-biology/vaal/vaal-1.6.ebuild @@ -1,20 +1,23 @@ # Copyright 1999-2012 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.4 2012/06/25 18:42:57 xarthisius Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.6.ebuild,v 1.5 2012/06/25 18:50:32 jlec Exp $ -EAPI="2" +EAPI=4 -inherit base autotools +AUTOTOOLS_AUTORECONF=yes + +inherit autotools-utils DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms" -HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" -SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL.${PV}.tgz +HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/" +SRC_URI=" + ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL.${PV}.tgz ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc" LICENSE="Whitehead-MIT" SLOT="0" -IUSE="" -KEYWORDS="amd64" +KEYWORDS="amd64 ~x86" +IUSE="openmp" DEPEND=">=dev-libs/boost-1.41.0-r3" RDEPEND="${DEPEND}" @@ -24,15 +27,22 @@ PATCHES=( "${FILESDIR}"/${P}-gcc47.patch ) -S=${WORKDIR}/vaal-33805 +DOCS=( "${DISTDIR}/VAAL_manual.doc" ) + +S="${WORKDIR}/vaal-33805" src_prepare() { - base_src_prepare - eautoreconf + sed \ + -e '/COPYING/d' \ + -i src/Makefile.am || die + + sed \ + -e '/AC_OPENMP_CEHCK/d' \ + -i configure.ac || die + autotools-utils_src_prepare } -src_install() { - einstall || die - insinto /usr/share/doc/${PF} - doins "${DISTDIR}/VAAL_manual.doc" +src_configure(){ + local myeconfargs=( $(use_enable openmp) ) + autotools-utils_src_configure } |