Removed obsolete versions. Ebuild clean-up.

(Portage version: 2.0.53)

4 files changed, 13 insertions, 65 deletions

diff --git a/sci-biology/bioperl-run/ChangeLog b/sci-biology/bioperl-run/ChangeLog
index c55412595bc0..61e5de453b24 100644
--- a/sci-biology/bioperl-run/ChangeLog
+++ b/sci-biology/bioperl-run/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bioperl-run
-# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.6 2005/11/28 12:02:35 mcummings Exp $
+# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.7 2006/01/21 17:34:58 ribosome Exp $
+
+  21 Jan 2006; Olivier Fisette <ribosome@gentoo.org>
+  -bioperl-run-1.2.2.ebuild, bioperl-run-1.4.ebuild:
+  Removed obsolete versions. Ebuild clean-up.
 
   28 Nov 2005; <mcumming@gentoo.org> bioperl-run-1.2.2.ebuild,
   bioperl-run-1.4.ebuild:
diff --git a/sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild b/sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild
deleted file mode 100644
index 7b5c44f27ef1..000000000000
--- a/sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.2.2.ebuild,v 1.6 2005/11/28 12:02:35 mcummings Exp $
-
-inherit perl-app eutils
-
-DESCRIPTION="A collection of tools for bioinformatics, genomics and life science research: subset required to run analyses"
-HOMEPAGE="http://www.bioperl.org/"
-#SRC_URI="http://www.cpan.org/modules/by-module/Bio/${P}.tar.gz"
-SRC_URI="http://www.bioperl.org/ftp/DIST/${P}.tar.gz"
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="x86"
-IUSE=""
-
-RDEPEND="
-	dev-perl/Algorithm-Diff
-	perl-core/File-Temp
-	dev-perl/IO-String
-	dev-perl/XML-Parser"
-
-DEPEND=""
-
-src_unpack() {
-	unpack ${A}
-	cd ${S}
-	# remove interactiveness
-	epatch ${FILESDIR}/bioperl-run-Pise-test-patch.diff
-}
-
-src_compile() {
-	# there's a test to run for BioGFFDB if using mysql
-	perl-module_src_compile || die "compile failed"
-	# make test
-##	perl-module_src_test || die "src test failed"
-}
-
-src_install() {
-	mydoc="AUTHORS BUGS FAQ"
-	perl-module_src_install
-
-	# bioperl scripts and examples
-	einfo 'Adding bioperl examples and scripts to /usr/share/...'
-	dodir /usr/share/${PF}/scripts
-	#insinto /usr/share/${PF}/scripts
-	cd ${S}/scripts/
-	tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
-	dodir /usr/share/${PF}/examples
-	cd ${S}/examples/
-	tar cf - ./ | ( cd ${D}/usr/share/${PF}/examples; tar xf -)
-	cd ${S}
-
-}
diff --git a/sci-biology/bioperl-run/bioperl-run-1.4.ebuild b/sci-biology/bioperl-run/bioperl-run-1.4.ebuild
index 147a9c83f42c..1fc72ede89cf 100644
--- a/sci-biology/bioperl-run/bioperl-run-1.4.ebuild
+++ b/sci-biology/bioperl-run/bioperl-run-1.4.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2005 Gentoo Foundation
+# Copyright 1999-2006 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.4.ebuild,v 1.6 2005/11/28 12:02:35 mcummings Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.4.ebuild,v 1.7 2006/01/21 17:34:58 ribosome Exp $
 
 inherit perl-app eutils
 
@@ -36,11 +36,10 @@ src_install() {
 	einfo 'Adding bioperl examples and scripts to /usr/share/...'
 	dodir /usr/share/${PF}/scripts
 	#insinto /usr/share/${PF}/scripts
-	cd ${S}/scripts/
-	tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -)
+	cd "${S}"/scripts/
+	tar cf - ./ | ( cd "${D}"/usr/share/${PF}/scripts; tar xf -)
 	dodir /usr/share/${PF}/examples
-	cd ${S}/examples/
-	tar cf - ./ | ( cd ${D}/usr/share/${PF}/examples; tar xf -)
-	cd ${S}
-
+	cd "${S}"/examples/
+	tar cf - ./ | ( cd "${D}"/usr/share/${PF}/examples; tar xf -)
+	cd "${S}"
 }
diff --git a/sci-biology/bioperl-run/files/digest-bioperl-run-1.2.2 b/sci-biology/bioperl-run/files/digest-bioperl-run-1.2.2
deleted file mode 100644
index cf92f27aa20d..000000000000
--- a/sci-biology/bioperl-run/files/digest-bioperl-run-1.2.2
+++ /dev/null
@@ -1 +0,0 @@
-MD5 2ffbaa69e713f102f86c7b7462ccff52 bioperl-run-1.2.2.tar.gz 811989