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author | Mike Frysinger <vapier@gentoo.org> | 2004-09-23 23:57:07 +0000 |
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committer | Mike Frysinger <vapier@gentoo.org> | 2004-09-23 23:57:07 +0000 |
commit | f209a9064c0c8ba34e953526a0258cf91a8df94a (patch) | |
tree | e5e94a93114849b81c678b9cb025f749a0287115 | |
parent | dont set EXTRA_ECONF (Manifest recommit) (diff) | |
download | gentoo-2-f209a9064c0c8ba34e953526a0258cf91a8df94a.tar.gz gentoo-2-f209a9064c0c8ba34e953526a0258cf91a8df94a.tar.bz2 gentoo-2-f209a9064c0c8ba34e953526a0258cf91a8df94a.zip |
dont set EXTRA_EMAKE
-rw-r--r-- | app-sci/clustalw/clustalw-1.83.ebuild | 20 | ||||
-rw-r--r-- | app-sci/phylip/phylip-3.5.ebuild | 16 | ||||
-rw-r--r-- | app-sci/phylip/phylip-3.61.ebuild | 18 |
3 files changed, 21 insertions, 33 deletions
diff --git a/app-sci/clustalw/clustalw-1.83.ebuild b/app-sci/clustalw/clustalw-1.83.ebuild index 00921c80bb22..f38c83343ccc 100644 --- a/app-sci/clustalw/clustalw-1.83.ebuild +++ b/app-sci/clustalw/clustalw-1.83.ebuild @@ -1,39 +1,33 @@ # Copyright 1999-2004 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# Author: Gontran Zepeda <gontran@gontran.net> -# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalw/clustalw-1.83.ebuild,v 1.6 2004/07/01 11:50:28 eradicator Exp $ +# $Header: /var/cvsroot/gentoo-x86/app-sci/clustalw/clustalw-1.83.ebuild,v 1.7 2004/09/23 23:56:02 vapier Exp $ inherit eutils DESCRIPTION="Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." - -# ClustalW is ubiquitous, but this is the contact group. HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/" - -# One source. SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz" LICENSE="clustalw" SLOT="0" -KEYWORDS="x86 sparc ppc alpha" +KEYWORDS="alpha ppc sparc x86" IUSE="" + DEPEND="virtual/libc" S=${WORKDIR}/${PN}${PV} src_unpack(){ - # let's use gentoo CFLAGS, et al. unpack ${A} cd ${S} epatch ${FILESDIR}/optimize-${PN}${PV}.patch } + src_compile() { - # clustalw uses only makefile. cool: stupid emake tricks. - EXTRA_EMAKE="-e ${CFLAGS}" - emake || die + emake -e ${CFLAGS} || die } + src_install() { - # a mano - dobin clustalw + dobin clustalw || die dodoc README clustalw.doc clustalw.ms clustalw_help } diff --git a/app-sci/phylip/phylip-3.5.ebuild b/app-sci/phylip/phylip-3.5.ebuild index da3afd2280a2..5eef8b21d524 100644 --- a/app-sci/phylip/phylip-3.5.ebuild +++ b/app-sci/phylip/phylip-3.5.ebuild @@ -1,9 +1,8 @@ # Copyright 1999-2004 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/phylip/phylip-3.5.ebuild,v 1.5 2004/06/24 22:14:56 agriffis Exp $ +# $Header: /var/cvsroot/gentoo-x86/app-sci/phylip/phylip-3.5.ebuild,v 1.6 2004/09/23 23:57:07 vapier Exp $ DESCRIPTION="PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees)" - HOMEPAGE="http://evolution.genetics.washington.edu/phylip.html" SRC_URI="ftp://evolution.genetics.washington.edu/pub/phylip/${PN}.tar.Z" @@ -11,17 +10,16 @@ LICENSE="freedist" SLOT="0" KEYWORDS="x86" IUSE="" + DEPEND="" +S=${WORKDIR} + src_compile() { - cd ${WORKDIR} - # uses only makefile. - EXTRA_EMAKE="-e ${CFLAGS}" - emake || die + emake -e ${CFLAGS} || die } -src_install() -{ - cd ${WORKDIR} + +src_install() { dobin clique consense contml contrast dnacomp dnadist dnainvar dobin dnaml dnamlk dnamove dnapars dnapenny dollop dolmove dolpenny dobin drawgram drawtree factor fitch gendist kitsch mix move neighbor diff --git a/app-sci/phylip/phylip-3.61.ebuild b/app-sci/phylip/phylip-3.61.ebuild index 5bd99f8f414f..f120a8be87e9 100644 --- a/app-sci/phylip/phylip-3.61.ebuild +++ b/app-sci/phylip/phylip-3.61.ebuild @@ -1,33 +1,29 @@ # Copyright 1999-2004 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/app-sci/phylip/phylip-3.61.ebuild,v 1.1 2004/08/07 18:54:54 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/app-sci/phylip/phylip-3.61.ebuild,v 1.2 2004/09/23 23:57:07 vapier Exp $ -DESCRIPTION="PHYLIP - The PHYLogeny Inference Package" +DESCRIPTION="The PHYLogeny Inference Package" HOMEPAGE="http://evolution.genetics.washington.edu/${PN}.html" SRC_URI="ftp://evolution.genetics.washington.edu/pub/${PN}/${P}.tar.gz" -LICENSE="freedist" +LICENSE="freedist" SLOT="0" -KEYWORDS="~x86 ~ppc" +KEYWORDS="~ppc ~x86" IUSE="" DEPEND="virtual/libc virtual/x11" -S=${WORKDIR}/${P}/src - src_compile() { + cd src mkdir ../fonts emake -j1 -e all put || die mv ../exe/font* ../fonts mv ../doc/phylip.html ../phylip.html } -src_install() -{ - cd ${WORKDIR}/${P} - - dobin exe/* +src_install() { + dobin exe/* || die dohtml phylip.html insinto /usr/share/doc/${PF}/html/doc |