diff options
author | Torsten Veller <tove@gentoo.org> | 2011-09-25 11:52:27 +0000 |
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committer | Torsten Veller <tove@gentoo.org> | 2011-09-25 11:52:27 +0000 |
commit | b429ef2e00bf7951dd4a1bf960260ffd230ad88b (patch) | |
tree | 8fc994885007fb7235075dd95d77185437ecb71b | |
parent | [bump] dev-perl/Net-Amazon-S3-0.540.0 (diff) | |
download | gentoo-2-b429ef2e00bf7951dd4a1bf960260ffd230ad88b.tar.gz gentoo-2-b429ef2e00bf7951dd4a1bf960260ffd230ad88b.tar.bz2 gentoo-2-b429ef2e00bf7951dd4a1bf960260ffd230ad88b.zip |
Version bump. Fix R/DEPEND.
(Portage version: 2.2.0_alpha59/cvs/Linux x86_64)
-rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild | 6 | ||||
-rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild | 6 | ||||
-rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.310.0.ebuild | 33 | ||||
-rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 8 |
4 files changed, 46 insertions, 7 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild index 92c8c76bd10f..9a9971717aeb 100644 --- a/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild,v 1.1 2011/09/01 13:02:36 tove Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.290.0.ebuild,v 1.2 2011/09/25 11:52:27 tove Exp $ EAPI=4 @@ -14,9 +14,9 @@ SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" -DEPEND="sci-biology/bioperl +RDEPEND="sci-biology/bioperl sci-biology/samtools" -RDEPEND="${DEPEND} +DEPEND="${RDEPEND} virtual/perl-ExtUtils-CBuilder virtual/perl-Module-Build " diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild index 498469d5f999..208e36db3c0b 100644 --- a/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild,v 1.1 2011/09/05 18:07:13 robbat2 Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild,v 1.2 2011/09/25 11:52:27 tove Exp $ EAPI=4 @@ -14,9 +14,9 @@ SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" -DEPEND="sci-biology/bioperl +RDEPEND="sci-biology/bioperl sci-biology/samtools" -RDEPEND="${DEPEND} +DEPEND="${RDEPEND} virtual/perl-ExtUtils-CBuilder virtual/perl-Module-Build " diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.310.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.310.0.ebuild new file mode 100644 index 000000000000..4c38aafc4fab --- /dev/null +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.310.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.310.0.ebuild,v 1.1 2011/09/25 11:52:27 tove Exp $ + +EAPI=4 + +MODULE_AUTHOR=LDS +MODULE_VERSION=1.31 +inherit perl-module + +DESCRIPTION="Read SAM/BAM database files" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="sci-biology/bioperl + >=sci-biology/samtools-0.1.16" +DEPEND="${RDEPEND} + virtual/perl-ExtUtils-CBuilder + virtual/perl-Module-Build +" + +SRC_TEST=do + +src_prepare() { + sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die + sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "khash.h"|#include "bam/khash.h"|' \ + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die + perl-module_src_prepare +} diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog index 4eca3ee318ba..f63062ecd46d 100644 --- a/dev-perl/Bio-SamTools/ChangeLog +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for dev-perl/Bio-SamTools # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.4 2011/09/05 18:07:13 robbat2 Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.5 2011/09/25 11:52:27 tove Exp $ + +*Bio-SamTools-1.310.0 (25 Sep 2011) + + 25 Sep 2011; Torsten Veller <tove@gentoo.org> Bio-SamTools-1.290.0.ebuild, + Bio-SamTools-1.300.0.ebuild, +Bio-SamTools-1.310.0.ebuild: + Version bump. Fix R/DEPEND. *Bio-SamTools-1.300.0 (05 Sep 2011) |