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# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
DESCRIPTION="Sequence analysis using profile hidden Markov models"
LICENSE="GPL-2"
HOMEPAGE="http://hmmer.janelia.org/"
SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz"
SLOT="0"
IUSE="pvm threads"
KEYWORDS="~alpha amd64 ia64 ~ppc ~sparc x86"
DEPEND="pvm? ( sys-cluster/pvm )"
src_compile() {
./configure \
--host=${CHOST} \
--prefix="${D}"/usr \
--exec_prefix="${D}"/usr \
--mandir="${D}"/usr/share/man \
--enable-lfs \
$(use_enable pvm) \
$(use_enable threads) || die
emake || die
}
src_install() {
einstall || die
cd src
dolib libhmmer.a
insinto /usr/include/hmmer
doins *.h
cd ../squid
dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate
dolib libsquid.a
insinto /usr/include/hmmer
doins *.h
cd ..
dodoc NOTES
newdoc 00README README
insinto /usr/share/doc/${PF}
doins Userguide.pdf
}
src_test() {
make check
}
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