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* sci-misc/mendeleydesktop: Revbump with fixed launcher (thanks Marius ↵Michael Weber2017-03-094-13/+65
| | | | | | Brehler, bug 611792). Package-Manager: Portage-2.3.4, Repoman-2.3.2
* sci-misc/mendeleydesktop: Remove oldDavid Seifert2017-03-052-125/+0
| | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2
* sci-misc/mendeleydesktop: Version bump to 1.17.8David Seifert2017-03-052-0/+131
| | | | | Bug: https://bugs.gentoo.org/show_bug.cgi?id=598228 Package-Manager: Portage-2.3.4, Repoman-2.3.2
* Drop remaining $Id$ and $Header$ from files.Ulrich Müller2017-02-281-1/+0
| | | | Bug: 611234
* Drop $Id$ per council decision in bug #611234.Robin H. Johnson2017-02-2829-29/+0
| | | | Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
* sci-misc/boinc: reorder maintainers to match descriptionsMichael Palimaka2017-02-171-4/+4
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-misc/boinc: Depend on virtual/imagemagick-toolsDavid Seifert2017-02-113-18/+6
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3907
* sci-misc/ViSP-images: Bump to 3.0.1Alexis Ballier2017-02-052-0/+25
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-misc/netlogo-bin: Removing EAPI 4 euildsGerhard Bräunlich2017-01-293-101/+0
| | | | | Package-Manager: portage-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/3710
* sci-misc/boinc: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-69/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3709
* sci-misc/cdfplayer: Version bumpAndreas K. Huettel2017-01-252-0/+83
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-misc/flashdot: Remove oldDavid Seifert2017-01-181-33/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3533
* sci-misc/boinc: Rename desktop file to boincmgr.desktopSven Eden2017-01-043-0/+12
| | | | | | | | | | | | | | | | | Gentoo-Bug: 599910 This is a workaround to the following issue: The desktop entry filename and the executable filename are different. Binary: boincmgr Desktop file: boincmgr-boinc.desktop This causes GNOME to use an ugly icon in the launcher. It is also not possible to add the BOINC icon to the favorites. Renaming the desktop file to boincmgr.desktop fixes both issues, although this is only a hotfix. The GNOME shell should be perfectly capable of using any well formed desktop file regardless of its name. Package-Manager: portage-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/3056
* sci-misc/boinc: Remove obsolete ebuilds, everybody should update.Sven Eden2017-01-043-478/+0
| | | | | Package-Manager: portage-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/3056
* sci-misc/boinc: Update init script to fix bug 584386 and 603522Sven Eden2017-01-042-23/+89
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Gentoo-Bug: 584386 The boinc init script starts boinc_client in daemon mode, and relies on boinccmd to send a quit signal to stop the service. This leads to the following two problems: 1) It is not possible to generate a pid file, as the pid read from the started boinc_client is invalid after it forked to background. 2) The stop command immediately returns, but boinc_client can still be active for a long time, over a minute in fact, while it is stopping running projects and cleaning up its work data. This is especially problematic when boinc is stopped while shutting down the machine. Gentoo-Bug: 603522 The init script for boinc calls "chown -R" on "${RUNTIMEDIR}". This leads to the security issue, that the "boinc" user can create a hardlink within ${RUNTIMEDIR} pointing to a file that he does not own, and the next time the daemon is started, the init script (as root) will give ownership of the *target* of the hardlink to the boinc user. This commit removes the usage of "chown -R" from start_pre(), and adds a single call to "chown" to create_work_directory() if, and only if the working directory has been newly created. Other fixes and changes: Another problem found is the function cuda_check(), which assumes the cuda libraries to be installed in /opt/cuda/lib, leading to an invalid symlink for libcudart.so on 64 bit machines where the library is installed in /opt/cuda/lib64. This commit changes the following behaviour, besides some long overdue cleanup: 1) start() no longer uses the --daemon option of the boinc_client, but the --background option of the start-stop-daemon command. Further it creates a pid file in the path set by the new config variable BOINC_PIDFILE, that has been added to boinc.conf. 2) stop() no longer uses boinccmd to send a quit signal, but uses the --stop and --pidfile options of the start-stop-daemon command. The waiting time should be large enough to successfully await the end of the exiting task of the boinc_client program. 3) cuda_check() now checks the validity of the libcudart.so symlink and removes it if it is invalid. Further it looks for a present libcudart.so library in /opt/cuda/lib* and picks the newest found to create a new symlink if none is present. 4) The suspend() and resume() functions have been updated to use the start-stop-daemon command, so both the user:group and a possibly required password are now used to circumvent authentication errors. Package-Manager: portage-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/3056
* Update metadata of sci packages due to retirementThomas Kahle2017-01-011-4/+0
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* sci-misc/cdfplayer: Add missing dependencyAndreas K. Hüttel2016-12-171-0/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-misc/boinc: Add new icons to all ebuilds with revbumpSven Eden2016-11-124-11/+366
| | | | | | | | | | | | | | | | | | | | Gentoo-Bug: 593362 Currently BOINC manager uses the 48x48 icon from /usr/share/pixmaps/boinc.png, which looks quite ugly. There are better icons from http://boinc.berkeley.edu/logo.php. If USE="X" is set, the ebuilds now use convert (from either imagemagick or graphicsmagick) to produce png icons from http://boinc.berkeley.edu/logo/boinc_glossy2_512_F.tif. Produced sizes are: 16, 22, 24, 32, 36, 48, 64, 72, 96, 128, 192 and 256. Package-Manager: portage-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/2768 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/boinc: Update to EAPI 6Sven Eden2016-11-123-9/+25
| | | | | | | Package-Manager: portage-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/2768 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/boinc: Cleanup of obsolete ebuilds and filesSven Eden2016-11-125-561/+1
| | | | | | | Package-Manager: portage-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/2768 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/boinc: Add suspend/resume to boinc init script, fix null byte input.Sven Eden2016-11-121-4/+18
| | | | | | | | | | | | | | | | | | | | | | | | | | Gentoo-Bug: 493476 Enable users to suspend/resume all projects without having to start and use the manager GUI. Gentoo-Bug: 584386 (partly) After upgrading to the current app-shells/bash-4.4 the stop command provokes the following warning: "command substitution: ignored null byte in input" This happens due to the usage of "cut" with --output-delimiter=''. Obviously "cut" puts a null byte out if the delimiter was set to nothing. (Checked with hexdump, it does.) The fix is to use "tr -d ." to concatenate the version numbers, and then to compare against an "expr substr". Package-Manager: portage-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/2768 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/boinc: Fix linker errors with wxGTK for boinc-7.6.33Sven Eden2016-11-122-0/+168
| | | | | | | | | | | | Gentoo-Bug: 587462 >=x11-libs/wxGTK-3.0.2.0-r3 has webview removed. This patch adds webview to the CLIENTGUILIBS. Package-Manager: portage-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/2768 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/boinc: New ebuild for boinc-7.4.52Sven Eden2016-11-121-3/+7
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/2768 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/vitables: Removing EAPI 4 ebuildGerhard Bräunlich2016-09-252-62/+4
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/2389 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/vitables: EAPI bump 4 -> 6Gerhard Bräunlich2016-09-252-2/+54
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/2389 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/ncview: Remove old EAPI=4 ebuildsDavid Seifert2016-09-253-67/+0
| | | | Package-Manager: portage-2.3.1
* sci-misc/ncview: Version bump to 2.1.7 + EAPI bump 4 -> 6Gerhard Bräunlich2016-09-252-0/+37
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/2388 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/gato: Remove EAPI=4 ebuildDavid Seifert2016-09-242-53/+0
| | | | Package-Manager: portage-2.3.1
* sci-misc/gato: Version bump to 1.2.2 + EAPI bump 4 -> 6Gerhard Bräunlich2016-09-242-0/+39
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/2397 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/lttoolbox: Removing EAPI 4 ebuildsGerhard Bräunlich2016-09-244-93/+0
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/2387 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/lttoolbox: Version bump to 3.3.3 + EAPI bump 4 -> 6Gerhard Bräunlich2016-09-242-0/+29
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/2387 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/gt-itm: Remove EAPI=0 ebuildDavid Seifert2016-09-241-75/+0
| | | | Package-Manager: portage-2.3.1
* sci-misc/gt-itm: EAPI bump 0 -> 6Gerhard Bräunlich2016-09-241-0/+80
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/2386 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/repsnapper: Added patch to fix compilation error with newer gccSlawomir Lis2016-09-213-0/+15
| | | | | | | | | | This bug is issued in newer gcc's because of abs() method is moved into std namespace. Added a patch to fix the issue. Reported in bug 594474 Reported-By: Toralf Förster <toralf.foerster@gmx.de> Package-Manager: portage-2.3.0
* sci-misc/repsnapper: dropped oldest version 2.2.0b_p3Slawomir Lis2016-09-192-35/+0
| | | | Package-Manager: portage-2.3.0
* sci-misc/repsnapper: updated deps to use correct libxmlpp slotSlawomir Lis2016-09-192-3/+3
| | | | | | | | | As reported in bug 594324 repsnapper is not compatible with latest libxmlpp-3.0 There is a need to use explicit slot to solve this problem Reported-By: Toralf Förster <toralf.foerster@gmx.de> Package-Manager: portage-2.3.0
* sci-misc/mendeleydesktop: Version bump.Michael Weber2016-08-312-2/+2
| | | | Package-Manager: portage-2.2.28
* sci-misc/mendeleydesktop: Version bump to 1.16.2; Drop python3_3 supportMarius Brehler2016-08-252-3/+3
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/2141 Signed-off-by: David Seifert <soap@gentoo.org>
* sourceforge: switch to https:// URIsMike Frysinger2016-07-271-1/+1
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* sci-misc/mendeleydesktop: Update ManifestMarius Brehler2016-06-271-2/+2
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/1769 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/boinc: New ebuild for boinc-7.6.33Sven Eden2016-06-142-0/+157
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/1629 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/boinc: New ebuild for boinc-7.4.43Sven Eden2016-06-141-0/+154
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/1629 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/boinc: New ebuild for boinc-7.2.44Sven Eden2016-06-141-0/+154
| | | | | | | Package-Manager: portage-2.2.28 Closes: https://github.com/gentoo/gentoo/pull/1629 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-misc/mendeleydesktop: Cleanup due to #231915Pacho Ramos2016-05-211-4/+0
| | | | Package-Manager: portage-2.3.0_rc1
* sci-misc/repsnapper: Fix QA MissingSlotDepDavid Seifert2016-05-151-2/+2
| | | | Package-Manager: portage-2.2.28
* sci-misc/h5utils: Fix QA MissingSlotDepDavid Seifert2016-05-151-2/+2
| | | | Package-Manager: portage-2.2.28
* sci-misc/boinc: Fix VSYSCALL check for boinc-7.6.31Sven Eden2016-05-081-21/+13
| | | | | | | | | | | | | | | | | | | Gentoo-Bug: 578750 The configuration options were misunderstood. - CONFIG_X86_VSYSCALL_EMULATION only enables a dmesg message if any legacy application tries to use any vsyscall. If disabled, these applications simply segfault with no output in dmesg. - To make the old calls available, either CONFIG_LEGACY_VSYSCALL_NATIVE or CONFIG_LEGACY_VSYSCALL_EMULATE must be used. Therefore the ebuild was reverted to check against the CONFIG_LEGACY_VSYSCALL_NONE option, and warns the user if this is set. Package-Manager: portage-2.2.28
* sci-misc/boinc: Fix VSYSCALL check for boinc-7.4.42Sven Eden2016-05-081-21/+13
| | | | | | | | | | | | | | | | | | | Gentoo-Bug: 578750 The configuration options were misunderstood. - CONFIG_X86_VSYSCALL_EMULATION only enables a dmesg message if any legacy application tries to use any vsyscall. If disabled, these applications simply segfault with no output in dmesg. - To make the old calls available, either CONFIG_LEGACY_VSYSCALL_NATIVE or CONFIG_LEGACY_VSYSCALL_EMULATE must be used. Therefore the ebuild was reverted to check against the CONFIG_LEGACY_VSYSCALL_NONE option, and warns the user if this is set. Package-Manager: portage-2.2.28
* sci-misc/boinc: Fix VSYSCALL check for boinc-7.2.42Sven Eden2016-05-081-21/+13
| | | | | | | | | | | | | | | | | | | Gentoo-Bug: 578750 The configuration options were misunderstood. - CONFIG_X86_VSYSCALL_EMULATION only enables a dmesg message if any legacy application tries to use any vsyscall. If disabled, these applications simply segfault with no output in dmesg. - To make the old calls available, either CONFIG_LEGACY_VSYSCALL_NATIVE or CONFIG_LEGACY_VSYSCALL_EMULATE must be used. Therefore the ebuild was reverted to check against the CONFIG_LEGACY_VSYSCALL_NONE option, and warns the user if this is set. Package-Manager: portage-2.2.28
* sci-misc/boinc: Fix variable default statements in init scriptsDavid Seifert2016-05-054-6/+7
| | | | Package-Manager: portage-2.2.28