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* sci-libs/gdal: needs hdf5[cxx]Sam James2022-05-231-1/+1
| | | | | Closes: https://bugs.gentoo.org/846530 Signed-off-by: Sam James <sam@gentoo.org>
* */*: Remove obsolete freecode remote-idUlrich Müller2022-05-231-1/+0
| | | | Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-libs/trilinos: ebuild maintenanceMatthias Maier2022-05-221-3/+13
| | | | | | | - fix automagic detection of openmp - disable Adelus package Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/clblast: Fixed error when building with CUDA enabled.Larry D. Pyeatt2022-05-223-0/+94
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/25590 Signed-off-by: Larry D. Pyeatt <larry.pyeatt@sdsmt.edu> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cfitsio: Stabilize 4.0.0 x86, #846791Jakov Smolić2022-05-211-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/cfitsio: Stabilize 4.0.0 amd64, #846791Jakov Smolić2022-05-211-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/cfitsio: Stabilize 4.0.0 sparc, #846791Jakov Smolić2022-05-211-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/cfitsio: Stabilize 4.0.0 ppc64, #846791Jakov Smolić2022-05-211-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/cfitsio: Stabilize 4.0.0 ppc, #846791Jakov Smolić2022-05-211-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/rtree: fix ordering of distutils_enable_pytestAndrew Ammerlaan2022-05-211-3/+3
| | | | | Closes: https://bugs.gentoo.org/846659 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/rtree: add 1.0.0Andrew Ammerlaan2022-05-202-0/+34
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/mpir: fix EendMissingArgSam James2022-05-201-2/+4
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: disable C# bindingsSam James2022-05-191-0/+2
| | | | | | | | | There's no need for these AFAIK and leaving it as it is would be wrong anyway (as it automagically tries to use at least .NET SDK bits to download from internet. Not tested with mono though.) Closes: https://bugs.gentoo.org/845369 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: backport build system fixes for disabling JPEG + PNGSam James2022-05-192-0/+243
| | | | | Closes: https://bugs.gentoo.org/844751 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/onnx: inherit python-any-r1Alfredo Tupone2022-05-191-2/+13
| | | | | | Closes: https://bugs.gentoo.org/846452 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/linux-gpib: update EAPI 6 -> 8, enable py3.{10,11}Andrew Ammerlaan2022-05-192-0/+182
| | | | | | | | | | | - Removed ED form compile phase - Fixed python install, we need --root not --prefix - Fixed Access Denied when installing perl stuff - Upgraded firmware tarball Bug: https://bugs.gentoo.org/836109 Closes: https://bugs.gentoo.org/846269 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/onnx: add to treeAlfredo Tupone2022-05-193-0/+41
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/pcl: Stabilize 1.12.0 amd64, #829841Joonas Niilola2022-05-191-2/+2
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/orocos_kdl: Stabilize 1.5.1 amd64, #829841Joonas Niilola2022-05-191-2/+2
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/opencascade: Stabilize 7.5.3-r6 amd64, #829841Joonas Niilola2022-05-191-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/vtk: Stabilize 9.0.3-r4 amd64, #829841Joonas Niilola2022-05-191-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/kissfft: Stabilize 131.1.0 amd64, #829841Joonas Niilola2022-05-191-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/QNNPACK: add to treeAlfredo Tupone2022-05-194-0/+188
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/XNNPACK: fix depsAlfredo Tupone2022-05-191-5/+6
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/NNPACK: remove ebegin eendAlfredo Tupone2022-05-181-1/+1
| | | | | | Closes: https://bugs.gentoo.org/845366 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/vtk: unrestrict hdf5Andrew Ammerlaan2022-05-181-1/+1
| | | | | | | | | | | The issue was never in vtk, it was in netcdf which has been fixed. Compiles without problems now. Bug: https://bugs.gentoo.org/833943 Closes: https://bugs.gentoo.org/834087 Closes: https://bugs.gentoo.org/809209 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/NNPACK: add to treeAlfredo Tupone2022-05-184-0/+213
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* Rename dev-cpp/{cpp-taskflow → taskflow}Matthias Maier2022-05-171-1/+1
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/nlopt: new upstream v2.7.1.Michael Orlitzky2022-05-172-0/+98
| | | | | | | | | | | * Update HOMEPAGE. * Disable MATLAB detection in src_configure(). * No more static libs. Closes: https://bugs.gentoo.org/661952 Bug: https://bugs.gentoo.org/826774 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/sundials: add 6.2.0Sam James2022-05-172-0/+120
| | | | | | | Bug: https://bugs.gentoo.org/731904 Bug: https://bugs.gentoo.org/831110 Bug: https://bugs.gentoo.org/715556 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gts: keyword 20121130 for ~loongWANG Xuerui2022-05-171-2/+2
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/fftw: keyword 3.3.10 for ~loongWANG Xuerui2022-05-171-1/+1
| | | | | | Tests passed on real hardware. Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/XNNPACK: add to treeAlfredo Tupone2022-05-174-0/+111
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/gdal: work around jpeg/png bugs in 3.5.0 for nowSam James2022-05-171-3/+3
| | | | | | | | | | | | | | | | Force on jpeg & png for now. It's not ideal but reported both upstream and I lack the gdal internals knowledge to deduce whether the various plugins which depend on each of them are functional (enough?) without each of them. They're both pretty small dependencies and hard to avoid in general, although I accept it's an inconvenience, some of this stuff was fairly expected & unavoidable with the big port to CMake. Bug: https://github.com/OSGeo/gdal/issues/5741 Bug: https://github.com/OSGeo/gdal/issues/5742 Bug: https://bugs.gentoo.org/844751 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: force JPEG support on for 3.5.0Sam James2022-05-171-3/+3
| | | | | | | | | | Upstream recommend it, the build is broken without it, and while we could fix the build issue, I don't see much point for an extremely common dependency (especially given we're the first ones to notice the build is broken w/o it). Closes: https://bugs.gentoo.org/844751 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: fix pkg-config include dir for 3.5.0Sam James2022-05-171-2/+2
| | | | | Closes: https://bugs.gentoo.org/845150 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: [QA] drop (very) stale GCC version checksSam James2022-05-172-11/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pgplot: [QA] drop (very) stale GCC version checksSam James2022-05-171-12/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: fix include directorySam James2022-05-171-0/+3
| | | | | Closes: https://bugs.gentoo.org/844874 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/symengine: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-164-5/+17
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/parmetis: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-161-3/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/openblas: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-163-3/+9
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/m4ri: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-161-2/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/linbox: deprecate tc-has-openmpDavid Seifert2022-05-161-2/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/kissfft: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-162-2/+10
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/coinor-csdp: [QA] use tc-check-openmp correctlyDavid Seifert2022-05-161-4/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/vtk: correct dep on gdalAndrew Ammerlaan2022-05-151-6/+6
| | | | | | | | | | | gdal-3.5.0 now uses python-single-r1, we have to correct the dependency here to avoid a very confusing blocker Correct the dep on jpeg while we are at it, following the deprecation of the virtual Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/superlu_mt: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-151-11/+13
| | | | | | Signed-off-by: David Seifert <soap@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/25488 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hipSPARSE: egrep -> grep -ESam James2022-05-152-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rocSPARSE: egrep -> grep -ESam James2022-05-152-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>