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* sci-libs/coinor-couenne: fix build with GCC 11Sam James2021-06-152-0/+47
| | | | | Closes: https://bugs.gentoo.org/792798 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/fftw: Remove :2.1 slotJakov Smolic2021-06-149-656/+0
| | | | | | | Closes: https://bugs.gentoo.org/772815 Closes: https://bugs.gentoo.org/775770 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/octomap: drop unmaintained 9999 ebuild.Andreas Sturmlechner2021-06-121-90/+0
| | | | | | | | Closes: https://bugs.gentoo.org/770601 Closes: https://github.com/gentoo/gentoo/pull/20938 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Signed-off-by: Patrice Clement <monsieurp@gentoo.org>
* sci-libs/amd: only depend on virtual/fortran if USE=fortranTimo Kamph2021-06-112-0/+2
| | | | | | | Closes: https://bugs.gentoo.org/765739 Signed-off-by: Timo Kamph <tka@kamph.org> Closes: https://github.com/gentoo/gentoo/pull/19090 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/dcmtk: fix VariableScope (EROOT)Sam James2021-06-111-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libcmatrix: port to EAPI 7, fix VariableScope (EROOT)Sam James2021-06-111-4/+4
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf: add version 4.2.15Andrew Ammerlaan2021-06-104-0/+128
| | | | | | Closes: https://bugs.gentoo.org/771648 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scotch: add version 6.1.0 and EAPI bumpAndrew Ammerlaan2021-06-102-0/+174
| | | | | | Closes: https://bugs.gentoo.org/743421 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/io_lib: add 1.14.14Andrew Ammerlaan2021-06-102-0/+38
| | | | | | Closes: https://bugs.gentoo.org/745033 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/oce: adjust dependency on sci-libs/vtkBernd Waibel2021-06-101-1/+1
| | | | | | | | | | The xdmf2 USE flag has been removed in latest vtk-8, as well as in vtk-9. Also it's not needed for proper building of the package. Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/21110 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: improve all-modules USE flagBernd Waibel2021-06-102-0/+439
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - add missing flags to REQUIRED_USE - add new mysql USE flag - needed by all-modules, adds new dependency on dev-db/mysql-connector-c. Dev-db/mariadb-connector-c isn't supported by this version. Fix an issue with using of deprecated my_bool when using mysql-connector-c. - remove xdmf2 USE flag, block sci-libs/xdmf2 with all-modules: sci-libs/xdmf2 doesn't ship any cmake configuration files, which leads to configuration errors when trying to build against external xdmf2 - block sci-libs/xdmf2: when built against internal xdmf2, there are header file collisions with the header files installed by sci-libs/xdmf2 - add dependency on sci-libs/kissfft, bug #754684) and drop bundled - fix an issue with xdmf3 library being installed in both library locations, lib and lib64 - fix QA issues with RPATH - byte compile python files - disable searching for zfp (no package in tree) - addresses some QA issues with defined but unused cmake variables: fixing all of them would need a thorough testing of each single USE flag and checking where these belong to, in this over-complex build system (bug #660582) Closes: https://bugs.gentoo.org/793839 Closes: https://bugs.gentoo.org/754684 Closes: https://bugs.gentoo.org/646846 Bug: https://bugs.gentoo.org/660582 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: add python-3.9 supportBernd Waibel2021-06-101-3/+3
| | | | | | Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/suitesparse: keyworded 5.4.0 for hppa, bug #716982Rolf Eike Beer2021-06-081-2/+2
| | | | | | | Package-Manager: Portage-3.0.18, Repoman-3.0.2 RepoMan-Options: --include-arches="hppa" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/pastix: Keyword 5.2.3 arm, #760803Sam James2021-06-081-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/scotch: fix toolchain sed for e.g. armSam James2021-06-081-3/+5
| | | | | Closes: https://bugs.gentoo.org/577272 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/qd: amd64 stable wrt bug #794496Agostino Sarubbo2021-06-081-1/+1
| | | | | | Package-Manager: Portage-3.0.13, Repoman-3.0.2 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/fftw: fix two lib path issue for ARCH=riscvYixun Lan2021-06-081-6/+9
| | | | | | | | thanks @soap for helping this Closes: https://bugs.gentoo.org/794208 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/p4est: version bump to 2.3.1Matthias Maier2021-06-074-0/+149
| | | | | | | | - update lua compatibility - put soname back Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libsc: add soname backMatthias Maier2021-06-072-0/+14
| | | | | Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libsc: update LUA compatibilityMatthias Maier2021-06-071-1/+1
| | | | | Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libsc: version bump to 2.3.1Matthias Maier2021-06-073-0/+165
| | | | | Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/qd: Stabilize 2.3.22 x86, #794496Sam James2021-06-071-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsvm: Bump to 3.25Pacho Ramos2021-06-062-0/+119
| | | | | | Closes: https://bugs.gentoo.org/787647 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/plplot: Bump minimum JRE/JDKDavid Seifert2021-06-061-2/+2
| | | | | | Closes: https://bugs.gentoo.org/787650 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/plplot: Fix USE=javaDavid Seifert2021-06-061-1/+3
| | | | | | Closes: https://bugs.gentoo.org/704248 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/cbflib & sci-chemistry/rasmol: remove last-rited packagesJoonas Niilola2021-06-064-262/+0
| | | | | | | Closes: https://bugs.gentoo.org/788508 Closes: https://bugs.gentoo.org/668568 Closes: https://bugs.gentoo.org/721998 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/plplot: fix typoAndrew Ammerlaan2021-06-061-1/+1
| | | | | | Closes: https://bugs.gentoo.org/794529 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/volk: bumpRick Farina2021-06-052-0/+46
| | | | | Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Rick Farina <zerochaos@gentoo.org>
* sci-libs/libecpint: Remove old 1.0.5Jakov Smolic2021-06-052-28/+0
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/21019 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/openlibm: Remove old 0.7.4Jakov Smolic2021-06-052-34/+0
| | | | | Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/plplot: add support for python-3.9Bernd Waibel2021-06-051-1/+3
| | | | | | | | | | Bugday 2021-06-05 Byte-compile python package to avoid QA warning Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/21131 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/rtree: add missing depAndrew Ammerlaan2021-06-051-0/+1
| | | | | | Closes: https://bugs.gentoo.org/794445 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/ceres-solver: properly depend on sphinx(_rtd_theme)Andrew Ammerlaan2021-06-051-2/+4
| | | | | Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/ceres-solver: add python-3.9 supportBernd Waibel2021-06-051-2/+2
| | | | | | | | | Bugday 2021-06-05 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/21130 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/rtree: add 0.9.7, add py3.10Andrew Ammerlaan2021-06-053-0/+35
| | | | | | Closes: https://bugs.gentoo.org/791766 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/opencascade: add missing die to 7.5.1-r1Joonas Niilola2021-06-041-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/opencascade: patch cmake config so that find_package worksWolfgang E. Sanyer2021-06-041-0/+7
| | | | | | Signed-off-by: Wolfgang E. Sanyer <ezzieyguywuf@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/20856 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/mathgl: subscribe to sci-libs/gsl subslotSam James2021-06-021-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/dealii: subscribe to sci-libs/gsl subslotSam James2021-06-023-3/+3
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/dealii: fix QA issuesMatthias Maier2021-06-023-3/+0
| | | | | | Closes: https://bugs.gentoo.org/741750 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: version bump to 9.3.0Matthias Maier2021-06-022-0/+164
| | | | | Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: update live ebuildMatthias Maier2021-06-021-5/+15
| | | | | | | | - fix dependency - migrate away from cmake-utils.eclass Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/vtk: delete README from bundled vtkm for nowSam James2021-06-021-0/+5
| | | | | | | | | | | Avoids collision with paraview. We'll ideally try to get paraview building with system VTK again but VTK takes a while to build so anything to prevent collisions for users now is important while we investigate that possibility. Bug: https://bugs.gentoo.org/253881 Bug: https://bugs.gentoo.org/793221 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: add 2.7Sam James2021-06-012-0/+65
| | | | | | | Closes: https://bugs.gentoo.org/725368 Bug: https://bugs.gentoo.org/687126 Bug: https://bugs.gentoo.org/687342 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/linux-gpib: Remove oldMichał Górny2021-05-312-179/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scotch: drop inactive maintainerDavid Seifert2021-05-311-4/+0
| | | | | Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/vtk: add various GCC 11 fixesSam James2021-05-312-0/+85
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: bump to 9.0.1Bernd Waibel2021-05-314-1/+579
| | | | | | | Closes: https://bugs.gentoo.org/723744 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/o2scl: drop deprecated ltprune eclassConrad Kostecki2021-05-311-2/+6
| | | | | Signed-off-by: Conrad Kostecki <conikost@gentoo.org> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/netcdf-fortran: drop deprecated ltprune eclassConrad Kostecki2021-05-311-2/+2
| | | | | Signed-off-by: Conrad Kostecki <conikost@gentoo.org> Signed-off-by: David Seifert <soap@gentoo.org>