Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
summaryrefslogtreecommitdiff
path: root/sci-libs
Commit message (Collapse)AuthorAgeFilesLines
* sci-libs/hipFFT: do not use cmake module to find HIP.Benda Xu2023-07-302-11/+95
| | | | | | | Loosen the versioned dependence on dev-util/hip. Reference: https://github.com/ROCmSoftwarePlatform/hipFFT/pull/66 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocFFT: remove versioned dependence on rocm-cmake.Benda Xu2023-07-301-2/+2
| | | | | | | | enable py3.11 Closes: https://bugs.gentoo.org/897226 Suggested-by: e-mmh <emma25000@caramail.fr> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/metis: Keyword 5.2.1-r2 sparc, #905468Arthur Zamarin2023-07-291-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/gklib: Keyword 5.1.1_p20230327-r1 sparc, #905468Arthur Zamarin2023-07-291-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/galib: Fix ISO C++17 does not allow register storage classBrahmajit Das2023-07-296-283/+45
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/32041 Closes: https://bugs.gentoo.org/898276 Signed-off-by: Brahmajit Das <brahmajit.xyz@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/rocSOLVER: disable all the non-FHS symlinks.Benda Xu2023-07-291-9/+2
| | | | | Bug: https://bugs.gentoo.org/911400 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/hipBLAS: add 5.4.2 to stick to FHS header locations.Benda Xu2023-07-292-0/+36
| | | | | Bug: https://bugs.gentoo.org/911400 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocSOLVER: non-versioned dependency on libfmt.Benda Xu2023-07-294-3/+113
| | | | | | | Version bump to 5.4.2, in line with rocBLAS. Bug: https://bugs.gentoo.org/908651 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/volk: add 3.0.0Rick Farina2023-07-282-0/+48
| | | | | Signed-off-by: Rick Farina <zerochaos@gentoo.org> Closes: https://bugs.gentoo.org/878737
* sci-libs/indilib: stop skipping test_base64 on BESam James2023-07-282-24/+0
| | | | | | | It's been fixed upstream. Closes: https://bugs.gentoo.org/763126 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: drop 4.8.1-r1, 4.8.1-r2Andreas Sturmlechner2023-07-275-185/+0
| | | | | Closes: https://bugs.gentoo.org/886889 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/armadillo: drop 10.8.2, 12.0.1Andreas Sturmlechner2023-07-273-308/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/libh2oxx: update HOMEPAGEMichael Mair-Keimberger2023-07-252-5/+5
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* sci-libs/libh2o: update HOMEPAGEMichael Mair-Keimberger2023-07-252-5/+5
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* sci-libs/indilib: add 2.0.2Andreas Sturmlechner2023-07-252-0/+89
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/clblast: Keyword 1.5.2-r1 riscv, #906025Jakov Smolić2023-07-241-2/+2
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/cartopy: Fix failing tests with >=sci-libs/proj-9.2Thomas Beierlein2023-07-213-1/+176
| | | | | | See https://github.com/SciTools/cartopy/issues/2145 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/cartopy: Readd '-n' parameter for pytestThomas Beierlein2023-07-201-1/+1
| | | | Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/cartopy: Cleanup inherits and add DISTUTILS_EXTThomas Beierlein2023-07-201-1/+2
| | | | Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/cartopy: Use PEP517 buildThomas Beierlein2023-07-181-0/+84
| | | | | | | Furthermore drop unsupported '-n' switch in epytest Closes: https://bugs.gentoo.org/910025 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/p4est: remove unused patchesMichael Mair-Keimberger2023-07-182-101/+0
| | | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/31937 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libsc: remove unused patchesMichael Mair-Keimberger2023-07-182-85/+0
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/pyshp: Use PEP517 buildThomas Beierlein2023-07-171-0/+30
| | | | | Closes: https://bugs.gentoo.org/910027 Signed-off-by: Thomas Beierlein <tomjbe@gentoo.org>
* sci-libs/gklib: Keyword 5.1.1_p20230327-r1 ppc, #905468Sam James2023-07-171-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/metis: Keyword 5.2.1-r2 ppc, #905468Sam James2023-07-171-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gklib: Keyword 5.1.1_p20230327-r1 ppc64, #905468Sam James2023-07-171-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/metis: Keyword 5.2.1-r2 ppc64, #905468Sam James2023-07-171-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* dev-lang/swig: keyword dev-python/numpy[lapack] dependencies.Benda Xu2023-07-171-1/+1
| | | | | | | | | | | | keyword for ~arm64-macos dev-util/b2: keyword 4.10.1 for ~arm64-macos virtual/blas: keyword 3.8 for ~arm64-macos virtual/cblas: keyword 3.8 for ~arm64-macos virtual/lapack: keyword 3.10 for ~arm64-macos sci-libs/lapack: keyword 3.11 for ~arm64-macos virtual/fortran: keyword 0-r1 for ~arm64-macos Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: don't build tests in src_compile.Michael Orlitzky2023-07-161-1/+1
| | | | | Bug: https://bugs.gentoo.org/910415 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* dev-python/scipy: keyword it and its dependences.Benda Xu2023-07-1710-10/+10
| | | | | | | | | | | | | | | | | | | | | | | keyword 1.11.1 for ~arm64-macos, ~x64-macos dev-python/gast: keyword 0.5.3-r1 for ~arm64-macos, ~x64-macos dev-python/beniget: keyword 0.4.1-r1 for ~arm64-macos, ~x64-macos dev-python/pythran: keyword 0.13.1 for ~arm64-macos, ~x64-macos sci-libs/gklib: keyword 5.1.1_p20230327-r1 for ~arm64-macos, ~x64-macos sci-libs/metis: keyword 5.2.1-r2 for ~arm64-macos, ~x64-macos sci-libs/ccolamd: keyword 2.9.6 for ~arm64-macos, ~x64-macos sci-libs/camd: keyword 2.4.6-r1 for ~arm64-macos, ~x64-macos sci-libs/colamd: keyword 2.9.6 for ~arm64-macos, ~x64-macos sci-libs/cholmod: keyword 3.0.14 for ~arm64-macos, ~x64-macos sci-libs/suitesparseconfig: keyword 5.4.0 for ~arm64-macos, ~x64-macos sci-libs/amd: keyword 2.4.6-r1 for ~arm64-macos, ~x64-macos sci-libs/umfpack: keyword 5.7.9 for ~arm64-macos, ~x64-macos sci-libs/arpack: keyword 3.8.0 for ~arm64-macos, ~x64-macos dev-python/charset-normalizer: keyword 3.2.0 for ~arm64-macos, ~x64-macos dev-python/requests: keyword 2.31.0 for ~arm64-macos, ~x64-macos dev-python/pooch: keyword 1.7.0 for ~arm64-macos, ~x64-macos Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/scikit-image: Keyword 0.19.3-r1 arm64, #906564Sam James2023-07-161-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/p4est: try to avoid a performance regression with 2.8.5Matthias Maier2023-07-151-0/+4
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libsc: try to avoid a performance regression with 2.8.5Matthias Maier2023-07-151-0/+4
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/parmetis: Keyword 4.0.3_p20230326-r1 arm64, #905468Sam James2023-07-151-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gklib: Keyword 5.1.1_p20230327-r1 arm64, #905468Sam James2023-07-151-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/metis: Keyword 5.2.1-r2 arm64, #905468Sam James2023-07-151-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/p4est: drop 2.8-r1Matthias Maier2023-07-142-71/+0
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/p4est: add 2.3.6Matthias Maier2023-07-145-0/+150
| | | | | | | | | | | This partially reverts commit 406d3fc821c6be208814445bc2ad98bed3c2e9b4 and bumps 2.3.3 to 2.3.6. In turns out that libsc/p4est-2.8.5 has a massive performance regression which necessitates to use the "stable" version 2.3.6. Thus, bring it back into the tree. Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libsc: drop 2.8.3Matthias Maier2023-07-142-66/+0
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libsc: add 2.3.6Matthias Maier2023-07-145-0/+181
| | | | | | | | | | | This partially reverts commit 406d3fc821c6be208814445bc2ad98bed3c2e9b4 and bumps 2.3.3 to 2.3.6. In turns out that libsc/p4est-2.8.5 has a massive performance regression which necessitates to use the "stable" version 2.3.6. Thus, bring it back into the tree Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gklib: Keyword 5.1.1_p20230327-r1 arm, #905468Arthur Zamarin2023-07-141-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/metis: Keyword 5.2.1-r2 arm, #905468Arthur Zamarin2023-07-141-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/openblas: improved parallel build fix.Michael Orlitzky2023-07-132-2/+69
| | | | | Bug: https://bugs.gentoo.org/910174 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/openblas: work around test parallelism issue.Michael Orlitzky2023-07-121-3/+3
| | | | | | | | | | Something weird is going on when we run "make tests" and the solution isn't obvious to me, so let's -j1 it for now. Unrelated to that, we don't need to build our custom shared-blas-lapack target unless USE=eselect-ldso is set, so let's not. Closes: https://bugs.gentoo.org/910174 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/linux-gpib-modules: add small patch for kernel 6.4Andrew Ammerlaan2023-07-122-0/+29
| | | | | Closes: https://bugs.gentoo.org/910230 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/dealii: add 9.5.0Matthias Maier2023-07-102-0/+170
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: update live ebuildMatthias Maier2023-07-101-10/+7
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/armadillo: Stabilize 11.4.0 amd64, #899446Arthur Zamarin2023-07-101-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/openblas: disable LTO for now.Michael Orlitzky2023-07-091-1/+4
| | | | | | | | | There's an upstream issue open for the type mismatches, but it doesn't look like an easy fix. For now we work around it by disabling LTO, which disables -Werror=lto-type-mismatch as well. Closes: https://bugs.gentoo.org/878987 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* dev-python/h5py: keyword it and its dependencies for ~arm64-macos.Benda Xu2023-07-091-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | dev-python/six: keyword 1.16.0-r1 for ~arm64-macos dev-python/regex: keyword 2023.6.3 for ~arm64-macos dev-python/python-dateutil: keyword 2.8.2-r1 for ~arm64-macos dev-python/idna: keyword 3.4 for ~arm64-macos dev-python/attrs: keyword 23.1.0 for ~arm64-macos dev-python/numpy: keyword 1.24.4-r1 for ~arm64-macos dev-python/jsonschema: keyword 4.17.3 for ~arm64-macos dev-python/arrow: keyword 1.2.3 for ~arm64-macos dev-python/fqdn: keyword 1.5.1-r2 for ~arm64-macos dev-python/hatch-fancy-pypi-readme: keyword 23.1.0 for ~arm64-macos dev-python/hatch-vcs: keyword 0.3.0 for ~arm64-macos dev-python/isoduration: keyword 20.11.0-r1 for ~arm64-macos dev-python/lark: keyword 1.1.5 for ~arm64-macos dev-python/pkgconfig: keyword 1.5.5-r1 for ~arm64-macos dev-python/poetry-core: keyword 1.6.1 for ~arm64-macos dev-python/pyrsistent: keyword 0.19.3 for ~arm64-macos dev-python/rfc3339-validator: keyword 0.1.4-r1 for ~arm64-macos dev-python/rfc3986-validator: keyword 0.1.1-r1 for ~arm64-macos dev-python/rfc3987: keyword 1.3.8-r2 for ~arm64-macos dev-python/strict-rfc3339: keyword 0.7-r2 for ~arm64-macos dev-python/webcolors: keyword 1.13 for ~arm64-macos dev-python/uri_template: keyword 1.3.0 for ~arm64-macos dev-python/jsonpointer: keyword 2.4 for ~arm64-macos sci-libs/hdf5: keyword 1.14.1 for ~arm64-macos Reported-by: Jiajie Chen <jiegec@qq.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>