Commit message (Collapse) | Author | Age | Files | Lines | |
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* | sci-biology/rebase: Version Bump | Justin Lecher | 2018-12-31 | 2 | -0/+46 |
| | | | | | Package-Manager: Portage-2.3.53, Repoman-2.3.12 Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-biology/bamtools: Bump to EAPI 7 | David Seifert | 2018-12-13 | 2 | -32/+12 |
| | | | | | Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: David Seifert <soap@gentoo.org> | ||||
* | sci-biology/bcftools: Version bump to 1.9 | David Seifert | 2018-10-28 | 3 | -0/+56 |
| | | | | | | Closes: https://bugs.gentoo.org/647714 Signed-off-by: David Seifert <soap@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11 | ||||
* | sci-biology/samtools: Version bump to 1.9 | David Seifert | 2018-10-28 | 2 | -0/+53 |
| | | | | | | Bug: https://bugs.gentoo.org/647714 Signed-off-by: David Seifert <soap@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11 | ||||
* | sci-biology/allpathslg: Fix build with glibc-2.27 | Pacho Ramos | 2018-10-21 | 1 | -1/+4 |
| | | | | | | Closes: https://bugs.gentoo.org/647340 Signed-off-by: Pacho Ramos <pacho@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11 | ||||
* | sci-biology/rebase: Version Bump | Justin Lecher | 2018-10-21 | 2 | -0/+46 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.40, Repoman-2.3.9 | ||||
* | sci-biology/fasttree: Drop 2.1.7 | Andreas Sturmlechner | 2018-10-14 | 4 | -80/+5 |
| | | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11 | ||||
* | sci-biology/express: Drop old | Andreas Sturmlechner | 2018-10-14 | 2 | -36/+0 |
| | | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11 | ||||
* | sci-biology/express: EAPI-6 bump | Andreas Sturmlechner | 2018-10-14 | 1 | -3/+4 |
| | | | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11 | ||||
* | sci-biology/vaal: Add build fix for glibc 2.27 | Andreas K. Hüttel | 2018-09-29 | 2 | -1/+14 |
| | | | | | | Closes: https://bugs.gentoo.org/647878 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org> Package-Manager: Portage-2.3.49, Repoman-2.3.10 | ||||
* | sci-biology/foldingathome: bump to 7.5.1 | Ian Stakenvicius | 2018-09-14 | 2 | -15/+18 |
| | | | | | | | Upstream has dropped support for 32bit Closes: https://bugs.gentoo.org/666208 Package-Manager: Portage-2.3.40, Repoman-2.3.9 | ||||
* | sci-biology/psipred: Remove support for non-existent deps | Michał Górny | 2018-08-26 | 4 | -8/+8 |
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* | sci-biology/biopython: x86 stable (bug #659292) | Thomas Deutschmann | 2018-07-02 | 1 | -1/+1 |
| | | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9 | ||||
* | sci-biology/biopython: amd64 stable, bug #659292 | Pacho Ramos | 2018-07-01 | 1 | -1/+1 |
| | | | | Package-Manager: Portage-2.3.41, Repoman-2.3.9 | ||||
* | sci-biology/cufflinks: Fix implicit conversion in make_pair call | David Seifert | 2018-06-30 | 2 | -1/+13 |
| | | | | | Closes: https://bugs.gentoo.org/650416 Package-Manager: Portage-2.3.41, Repoman-2.3.9 | ||||
* | sci-biology/rebase: Bump to latest release | Justin Lecher | 2018-06-09 | 2 | -0/+46 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.40, Repoman-2.3.9 | ||||
* | sci-biology/aaindex: use HTTPs | Michael Mair-Keimberger | 2018-06-09 | 1 | -2/+2 |
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* | sci-biology/bamtools: Use ninja for building | David Seifert | 2018-06-02 | 2 | -2/+4 |
| | | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9 | ||||
* | sci-biology/biopython: Bump to 1.71 | David Seifert | 2018-05-27 | 2 | -0/+58 |
| | | | | | Closes: https://bugs.gentoo.org/653006 Package-Manager: Portage-2.3.40, Repoman-2.3.9 | ||||
* | sci-biology/phylip: Update dependencies (x11-proto/* -> x11-base/xorg-proto). | Arfrever Frehtes Taifersar Arahesis | 2018-05-21 | 3 | -5/+5 |
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* | sci-biology/wgs-assembler: remove old | Michael Mair-Keimberger | 2018-05-21 | 1 | -67/+0 |
| | | | | Closes: https://github.com/gentoo/gentoo/pull/8512 | ||||
* | sci-biology/glimmer: use HTTPs | Michael Mair-Keimberger | 2018-05-21 | 2 | -5/+5 |
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* | sci-biology/velvet: use HTTPs | Michael Mair-Keimberger | 2018-05-21 | 2 | -6/+6 |
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* | sci-biology/mafft: use HTTPs | Michael Mair-Keimberger | 2018-05-21 | 3 | -9/+9 |
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* | sci-biology/mothur: use HTTPs | Michael Mair-Keimberger | 2018-05-21 | 1 | -3/+3 |
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* | sci-biology/prosite: use HTTPs | Michael Mair-Keimberger | 2018-05-21 | 1 | -2/+2 |
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* | sci-biology/ncbi-tools: use HTTPs | Michael Mair-Keimberger | 2018-05-21 | 1 | -2/+2 |
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* | sci-biology/fasta: use HTTPs | Michael Mair-Keimberger | 2018-05-21 | 1 | -2/+2 |
| | | | | Closes: https://github.com/gentoo/gentoo/pull/8513 | ||||
* | sci-biology/seqan: inherit versionator | Andreas Sturmlechner | 2018-05-19 | 1 | -2/+2 |
| | | | | Package-Manager: Portage-2.3.38, Repoman-2.3.9 | ||||
* | sci-biology/seqan: inherit versionator | Andreas Sturmlechner | 2018-05-18 | 1 | -2/+2 |
| | | | | Package-Manager: Portage-2.3.38, Repoman-2.3.9 | ||||
* | sci-biology/biopandas: Drop old | Andreas Sturmlechner | 2018-05-16 | 2 | -43/+0 |
| | | | | Package-Manager: Portage-2.3.36, Repoman-2.3.9 | ||||
* | sci-biology/wgs-assembler: amd64 stable wrt bug #374815 | Agostino Sarubbo | 2018-05-08 | 1 | -1/+1 |
| | | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 RepoMan-Options: --include-arches="amd64" | ||||
* | sci-biology/wgs-assembler: x86 stable (bug #374815) | Thomas Deutschmann | 2018-05-07 | 1 | -1/+1 |
| | | | | Package-Manager: Portage-2.3.34, Repoman-2.3.9 | ||||
* | sci-biology/bioruby: add ruby24 | Hans de Graaff | 2018-05-06 | 1 | -1/+1 |
| | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 | ||||
* | sci-biology/wgs-assembler: Revision bump using libtirpc, bug 374815 | Andreas K. Hüttel | 2018-04-29 | 2 | -0/+88 |
| | | | | | Bug: https://bugs.gentoo.org/374815 Package-Manager: Portage-2.3.31, Repoman-2.3.9 | ||||
* | update pypi HOMEPAGE to avoid redirection | Michael Mair-Keimberger | 2018-04-26 | 3 | -3/+3 |
| | | | | Closes: https://github.com/gentoo/gentoo/pull/8080 | ||||
* | Retirement: ercpe@gentoo.org bug #475224 | Amy Liffey | 2018-04-26 | 1 | -4/+0 |
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* | sci-biology/foldingathome: fix systemd unit | Ian Stakenvicius | 2018-04-25 | 1 | -5/+5 |
| | | | | | | | | | This isn't a perfect fix since if the EPREFIX path contains characters that need to be quoted the paths will still fail, however when compared to a systemd unit that doesn't work at all this is significantly better than nothing. Bug: http://bugs.gentoo.org/645200 Package-Manager: Portage-2.3.19, Repoman-2.3.6 | ||||
* | Replace pypi.python.org with pypi.org in HOMEPAGE | Mike Gilbert | 2018-04-19 | 4 | -4/+4 |
| | | | | Bug: https://bugs.gentoo.org/653540 | ||||
* | sci-biology/bioruby: remove unused patch | Michael Mair-Keimberger | 2018-04-18 | 1 | -29/+0 |
| | | | | Closes: https://github.com/gentoo/gentoo/pull/8034 | ||||
* | sci-biology/beast-mcmc: remove last rited package | Mikle Kolyada | 2018-04-15 | 4 | -177/+0 |
| | | | | Closes: https://bugs.gentoo.org/514432 | ||||
* | sci-biology/bioruby: remove broken ruby22-only version, bug 645612 | Hans de Graaff | 2018-04-14 | 2 | -38/+0 |
| | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 | ||||
* | sci-biology/bioruby: stable on amd64 and x86, bug 628636 | Hans de Graaff | 2018-04-14 | 1 | -3/+3 |
| | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 | ||||
* | sci-biology/qrna: Drop old | Andreas Sturmlechner | 2018-04-06 | 1 | -58/+0 |
| | | | | Package-Manager: Portage-2.3.28, Repoman-2.3.9 | ||||
* | sci-biology/qrna: DEPEND on sci-biology/hmmer:2 | Martin Mokrejš | 2018-04-06 | 1 | -0/+58 |
| | | | | Closes: https://github.com/gentoo/gentoo/pull/7134 | ||||
* | sci-biology/clustalx: Drop Qt4-based | Andreas Sturmlechner | 2018-03-18 | 2 | -92/+0 |
| | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 | ||||
* | sci-biology/clustalx: x86 stable (bug #644726) | Thomas Deutschmann | 2018-03-18 | 1 | -1/+1 |
| | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 | ||||
* | sci-biology/clustalx: amd64 stable wrt bug #644726 | Mikle Kolyada | 2018-03-17 | 1 | -1/+1 |
| | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 | ||||
* | sci-biology/abyss: bump up to 2.0.3 | Sergei Trofimovich | 2018-03-15 | 2 | -0/+55 |
| | | | | Package-Manager: Portage-2.3.24, Repoman-2.3.6 | ||||
* | sci-biology/rebase: Bump to latest release | Justin Lecher | 2018-03-11 | 2 | -0/+46 |
| | | | | | Package-Manager: Portage-2.3.20, Repoman-2.3.6 Signed-off-by: Justin Lecher <jlec@gentoo.org> |