diff options
Diffstat (limited to 'sci-libs/shogun/shogun-2.0.0.ebuild')
| -rw-r--r-- | sci-libs/shogun/shogun-2.0.0.ebuild | 164 |
1 files changed, 164 insertions, 0 deletions
diff --git a/sci-libs/shogun/shogun-2.0.0.ebuild b/sci-libs/shogun/shogun-2.0.0.ebuild new file mode 100644 index 000000000000..8e26b7fb77e0 --- /dev/null +++ b/sci-libs/shogun/shogun-2.0.0.ebuild @@ -0,0 +1,164 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils multilib versionator toolchain-funcs java-pkg-opt-2 + +MYPV=$(get_version_component_range 1-2) +MYPD=${PN}-data-0.4 + +DESCRIPTION="Large Scale Machine Learning Toolbox" +HOMEPAGE="http://shogun-toolbox.org/" +SRC_URI="ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2 + test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 ) + examples? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )" + +LICENSE="GPL-3 free-noncomm" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="arpack bzip2 doc eigen examples glpk gzip hdf5 json lapack lpsolve mono lua lzma + lzo nlopt java R ruby octave python readline smp snappy static-libs superlu test xml" + +RDEPEND=" + sci-libs/gsl + sys-libs/zlib + arpack? ( sci-libs/arpack ) + bzip2? ( app-arch/bzip2 ) + eigen? ( >=dev-cpp/eigen-3 ) + glpk? ( sci-mathematics/glpk ) + gzip? ( app-arch/gzip ) + hdf5? ( sci-libs/hdf5 ) + java? ( >=virtual/jdk-1.5 ) + json? ( dev-libs/json-c ) + lapack? ( virtual/cblas virtual/lapack ) + lpsolve? ( sci-mathematics/lpsolve ) + lua? ( dev-lang/lua ) + lzo? ( dev-libs/lzo ) + mono? ( dev-lang/mono ) + nlopt? ( sci-libs/nlopt ) + octave? ( sci-mathematics/octave[hdf5=] ) + python? ( dev-python/numpy ) + R? ( dev-lang/R ) + readline? ( sys-libs/readline ) + ruby? ( >=dev-ruby/narray-0.6.0.1-r2 ) + snappy? ( app-arch/snappy ) + superlu? ( sci-libs/superlu ) + xml? ( dev-libs/libxml2 )" + +DEPEND="${RDEPEND} + virtual/pkgconfig + doc? ( app-doc/doxygen[dot] ) + java? ( >=dev-lang/swig-2.0.4 dev-java/ant ) + octave? ( >=dev-lang/swig-2.0.4 ) + python? ( >=dev-lang/swig-2.0.4 test? ( sci-libs/scipy ) ) + ruby? ( >=dev-lang/swig-2.0.4 )" + +S="${WORKDIR}/${P}/src" + +src_prepare() { + epatch \ + "${FILESDIR}"/${PN}-1.1.0-respect-ldflags.patch \ + "${FILESDIR}"/${PN}-1.1.0-test-readline.patch \ + "${FILESDIR}"/${PN}-1.1.0-as-needed.patch + + # dist-packages is only for debian + # remove exagarated optimizations (-O9 does not exist...) + # use gentoo lapack framework + sed -i \ + -e 's/dist-packages/site-packages/g' \ + -e '/^COMP_OPTS=/d' \ + -e "s:-llapack -lcblas:$($(tc-getPKG_CONFIG) --libs cblas lapack):g" \ + configure || die + + # disable ldconfig which violates sandbox + # install in gentoo java standard paths + sed -i \ + -e '/ldconfig/d' \ + -e '/share\/java/d' \ + -e '/jni/d' \ + -e 's/OCTAVE_LOADPATH/OCTAVE_PATH/g' \ + Makefile.template || die +} + +src_configure() { + # define interfaces to shogun library to build + local x iface + for x in java lua octave python ruby ; do + use ${x} && iface="${iface}${x}_modular," + done + use mono && iface="${iface}csharp_modular," + use R && iface="${iface}r_modular," + if use static-libs; then + iface="${iface}cmdline_static," + use octave && iface="${iface}octave_static," + use python && iface="${iface}python_static," + use R && iface="${iface}r_static," + use octave && use python && use R && iface="${iface}elwms_static," + fi + iface="${iface%,}" + + # gentoo bug #302621 + use hdf5 && has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc + ./configure \ + --disable-cpudetection \ + --destdir="${D}" \ + --prefix="${EPREFIX}/usr" \ + --mandir="${EPREFIX}/usr/share/man" \ + --libdir="${EPREFIX}/usr/$(get_libdir)" \ + --cc="$(tc-getCC)" \ + --cxx="$(tc-getCXX)" \ + --target="${CTARGET}" \ + --interfaces=${iface} \ + $(use_enable arpack) \ + $(use_enable bzip2) \ + $(use_enable doc doxygen) \ + $(use_enable eigen eigen3) \ + $(use_enable glpk) \ + $(use_enable gzip) \ + $(use_enable hdf5) \ + $(use_enable json) \ + $(use_enable lapack) \ + $(use_enable lpsolve) \ + $(use_enable lzma) \ + $(use_enable lzo) \ + $(use_enable nlopt) \ + $(use_enable readline) \ + $(use_enable smp hmm-parallel) \ + $(use_enable snappy) \ + $(use_enable static-libs static) \ + $(use_enable superlu) \ + $(use_enable xml) || die +} + +src_compile() { + emake + use doc && emake -C ../doc +} + +src_test() { + use lapack || return + ln -s ../../${MYPD}/* ../data/ + emake DESTDIR="${D}" install + # disable because very long + # emake tests + emake -C shogun check-examples +} + +src_install() { + default + use static-libs || rm "${ED}"/usr/$(get_libdir)/*.a + if use java; then + java-pkg_dojar interfaces/java_modular/shogun.jar + java-pkg_doso interfaces/java_modular/libmodshogun.so + fi + + use doc && dohtml -r ../doc/html/* + if use examples; then + insinto /usr/share/doc/${PF} + emake -C ../examples clean && doins -r ../examples + insinto /usr/share/doc/${PF}/data + doins -r "${WORKDIR}"/${MYPD}/* + fi +} |