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-rw-r--r--sci-libs/libcmatrix/Manifest1
-rw-r--r--sci-libs/libcmatrix/files/libcmatrix-3.11.0-fix-c++14.patch40
-rw-r--r--sci-libs/libcmatrix/files/libcmatrix-3.11.0-gcc5.2.patch16
-rw-r--r--sci-libs/libcmatrix/files/libcmatrix-3.11.0-shared.patch80
-rw-r--r--sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.4.patch12
-rw-r--r--sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.6.patch16
-rw-r--r--sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.7.patch227
-rw-r--r--sci-libs/libcmatrix/files/libcmatrix-3.2.1-minuit2.patch14
-rw-r--r--sci-libs/libcmatrix/files/libcmatrix-3.9.0-atlas.patch24
-rw-r--r--sci-libs/libcmatrix/libcmatrix-3.11.0-r1.ebuild59
-rw-r--r--sci-libs/libcmatrix/metadata.xml8
11 files changed, 0 insertions, 497 deletions
diff --git a/sci-libs/libcmatrix/Manifest b/sci-libs/libcmatrix/Manifest
deleted file mode 100644
index 62e8160f899d..000000000000
--- a/sci-libs/libcmatrix/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST libcmatrix-3.11.0.tar.gz 1064634 BLAKE2B 5eb5ffe7ceb80f430fcfb8ca42ab029863a2571ef01adfdc59644fa9951cb1c5205eb74faefdef1fa335af3a16396bb154b6258f0d4dd2c52b5a40eac6cda9b0 SHA512 b0f5d9382e0a7c6f8695488481c51e5cdc38d89c9371203870c31a91bf957956a85301cf3aa035b9214d581077581dc1f599f092dd2f077ee14e6b4fd06128c2
diff --git a/sci-libs/libcmatrix/files/libcmatrix-3.11.0-fix-c++14.patch b/sci-libs/libcmatrix/files/libcmatrix-3.11.0-fix-c++14.patch
deleted file mode 100644
index 74e49285dd04..000000000000
--- a/sci-libs/libcmatrix/files/libcmatrix-3.11.0-fix-c++14.patch
+++ /dev/null
@@ -1,40 +0,0 @@
-Fix building with C++14, which errors out due -Wnarrowing conversions.
-See also: https://bugs.gentoo.org/show_bug.cgi?id=594680
-
---- a/include/lcm_ssecomplex.h
-+++ b/include/lcm_ssecomplex.h
-@@ -151,7 +151,7 @@
- {
- static const union {
- int i[4]; ssecomplex_t v;
-- } signbithigh = {{0,0,0,0x80000000}};
-+ } signbithigh = {{0,0,0,(int)0x80000000}};
- ssecomplex_t b_im = _mm_shuffle_pd(b,b,3); // Imag. part of b in both
- const ssecomplex_t b_re = _mm_shuffle_pd(b,b,0); // Real part of b in both
- const ssecomplex_t tmp=_mm_mul_pd(a,b_re);
-@@ -166,7 +166,7 @@
- ssecomplex_t b_re = _mm_set1_pd(b);
- static const union {
- int i[4]; ssecomplex_t v;
-- } signbithigh = {{0,0,0,0x80000000}};
-+ } signbithigh = {{0,0,0,(int)0x80000000}};
- b_re = _mm_xor_pd(b_re, signbithigh.v); // Change sign of high
- return complex(_mm_mul_pd(a.z_, b_re));
- }
-@@ -184,14 +184,14 @@
- inline complex operator- (const complex& a) {
- static const union { // (signbit,signbit)
- int i[4]; ssecomplex_t v;
-- } signbits = {{0,0x80000000,0,0x80000000}};
-+ } signbits = {{0,(int)0x80000000,0,(int)0x80000000}};
- return complex(_mm_xor_pd(a, signbits.v)); // Change sign of both elements
- }
-
- inline complex conj(const complex& a) {
- static const union { // (signbit,signbit)
- int i[4]; ssecomplex_t v;
-- } signbithigh = {{0,0,0,0x80000000}};
-+ } signbithigh = {{0,0,0,(int)0x80000000}};
- return complex(_mm_xor_pd(a.z_, signbithigh.v)); // Change sign of imag. part
- }
-
diff --git a/sci-libs/libcmatrix/files/libcmatrix-3.11.0-gcc5.2.patch b/sci-libs/libcmatrix/files/libcmatrix-3.11.0-gcc5.2.patch
deleted file mode 100644
index d5d40246a2f8..000000000000
--- a/sci-libs/libcmatrix/files/libcmatrix-3.11.0-gcc5.2.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- include/MultiMatrix.h | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/include/MultiMatrix.h b/include/MultiMatrix.h
-index 2d54db5..e95ce4c 100755
---- a/include/MultiMatrix.h
-+++ b/include/MultiMatrix.h
-@@ -1225,7 +1225,7 @@ template<class T,size_t N> struct new_trait_<T,N,N> { typedef MultiMatrix<T,N> v
- #endif
- //LCM_SUPPRESS_VIEWS
-
-- template<size_t N, template<size_t> class CheckClass =LCM_CheckBoundsDefault>
-+ template<size_t N, template<size_t> class CheckClass>
- class Indexer<N,CheckClass>::permuted_iterator : public ::std::iterator< ::std::bidirectional_iterator_tag,size_t>
- {
- private:
diff --git a/sci-libs/libcmatrix/files/libcmatrix-3.11.0-shared.patch b/sci-libs/libcmatrix/files/libcmatrix-3.11.0-shared.patch
deleted file mode 100644
index 6c5c3167619e..000000000000
--- a/sci-libs/libcmatrix/files/libcmatrix-3.11.0-shared.patch
+++ /dev/null
@@ -1,80 +0,0 @@
-diff --git a/Makefile.in b/Makefile.in
-index 1361371..1448e76 100755
---- a/Makefile.in
-+++ b/Makefile.in
-@@ -13,8 +13,8 @@ AR=@AR@
-
- # You shouldn't need to alter anything below here
-
--COMPILE=$(CXX) $(CPPFLAGS) $(CXXFLAGS) -c
--ALLOPTFLAGS=$(OPTFLAGS) -DNDEBUG
-+COMPILE=$(CXX) $(CPPFLAGS) $(CXXFLAGS) -fPIC -c
-+#ALLOPTFLAGS=$(OPTFLAGS) -DNDEBUG
-
- LOCALOBJS= local/CrystalSystem.o local/CrystalGeneric.o local/MoleculeStructure.o
- COREOBJS= coredefs/complex.o coredefs/common.o coredefs/diagonal.o coredefs/diagonalise.o coredefs/power.o coredefs/invert.o coredefs/transforms.o coredefs/blocking.o coredefs/mixed.o coredefs/realtransforms.o coredefs/Chebyshev.o
-@@ -36,7 +36,7 @@ ALLTHROBJS=$(UNSAFEOBJS:.o=_r.o) $(ALLSAFEOBJS)
-
- ROOT=..
-
--first: lib/libcmatrix.a
-+first: lib/libcmatrix.so.3.11.0
-
- #%.o: %.f
- # @F77@ @FFLAGS@ -c -o $@ $<
-@@ -68,25 +68,25 @@ tempclean:
- # -cd optim; @CLEAN@
- # -cd local; @CLEAN@
-
--lib/libcmatrix.a: $(ALLNORMOBJS)
-- $(AR) $@ $(ALLNORMOBJS)
-- chmod a+rx $@
-- $(RANLIB) $@
--
--lib/libcmatrix_p.a: $(ALLPROFOBJS)
-- $(AR) $@ $(ALLPROFOBJS)
-- chmod a+rx $@
-- $(RANLIB) $@
--
--lib/libcmatrix-g.a: $(ALLGOBJS)
-- $(AR) $@ $(ALLGOBJS)
-- chmod a+rx $@
-- $(RANLIB) $@
--
--lib/libcmatrix_r.a: $(ALLTHROBJS)
-- $(AR) @MTFLAGS@ $@ $(ALLTHROBJS)
-- chmod a+rx $@
-- $(RANLIB) $@
-+lib/libcmatrix.so.3.11.0: $(ALLNORMOBJS)
-+ $(CXX) $(LDFLAGS) -fPIC -shared -Wl,--soname,libcmatrix.so.3 -o $@ $(ALLNORMOBJS) -lrt @ATLAS_LIBS@
-+ ln -sf libcmatrix.so.3.11.0 lib/libcmatrix.so.3
-+ ln -sf libcmatrix.so.3.11.0 lib/libcmatrix.so
-+
-+lib/libcmatrix_p.so.3.11.0: $(ALLPROFOBJS)
-+ $(CXX) $(LDFLAGS) -fPIC -shared -Wl,--soname,libcmatrix.so.3 -o $@ $(ALLPROFOBJS) -lrt @ATLAS_LIBS@
-+ ln -sf libcmatrix_p.so.3.11.0 lib/libcmatrix_p.so.3
-+ ln -sf libcmatrix_p.so.3.11.0 lib/libcmatrix_p.so
-+
-+lib/libcmatrix-g.so.3.11.0: $(ALLGOBJS)
-+ $(CXX) $(LDFLAGS) -fPIC -shared -Wl,--soname,libcmatrix.so.3 -o $@ $(ALLGOBJS) -lrt @ATLAS_LIBS@
-+ ln -sf libcmatrix-g.so.3.11.0 lib/libcmatrix-g.so.3
-+ ln -sf libcmatrix-g.so.3.11.0 lib/libcmatrix-g.so
-+
-+lib/libcmatrix.so_r.3.11.0: $(ALLTHROBJS)
-+ $(CXX) $(LDFLAGS) -fPIC -shared -Wl,--soname,libcmatrix.so.3 -o $@ $(ALLTHROBJS) -lrt @ATLAS_LIBS@
-+ ln -sf libcmatrix_r.so.3.11.0 lib/libcmatrix_r.so.3
-+ ln -sf libcmatrix_r.so.3.11.0 lib/libcmatrix_r.so
-
- @CONFIGLEAF@.tar.gz:
- cd $(ROOT) ; tar --exclude lib/* --exclude *.o --exclude=*~ --exclude=Makefile --exclude=include/config.h --exclude=config.status -cvf @CONFIGLEAF@.tar @CONFIGLEAF@
-diff --git a/configure.ac b/configure.ac
-index c0ae0e1..50dcd5a 100755
---- a/configure.ac
-+++ b/configure.ac
-@@ -1,5 +1,6 @@
- AC_INIT(configure.ac)
- AC_CONFIG_HEADER(include/config.h)
-+LT_INIT
-
- DEFAR="ar ru"
- MAKEEXTRA=
diff --git a/sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.4.patch b/sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.4.patch
deleted file mode 100644
index 24c1a89b48d0..000000000000
--- a/sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.4.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff --git a/include/DynamicList.h b/include/DynamicList.h
-index f8c1346..05a7b10 100755
---- a/include/DynamicList.h
-+++ b/include/DynamicList.h
-@@ -4,6 +4,7 @@
- #include "BaseList.h"
- #include "lcm_basethreads.h"
- #include "Warnings.h"
-+#include <cstdio>
-
- namespace libcmatrix {
-
diff --git a/sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.6.patch b/sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.6.patch
deleted file mode 100644
index b3d8c8d19996..000000000000
--- a/sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.6.patch
+++ /dev/null
@@ -1,16 +0,0 @@
- NMR/MetaPropagation.cc | 2 +-
- 1 files changed, 1 insertions(+), 1 deletions(-)
-
-diff --git a/NMR/MetaPropagation.cc b/NMR/MetaPropagation.cc
-index b7ed98b..ce8c16f 100755
---- a/NMR/MetaPropagation.cc
-+++ b/NMR/MetaPropagation.cc
-@@ -2136,7 +2136,7 @@ SpinOpGenerator::add_A0(T& dest,F func, double coup, size_t j, size_t sk, Type2T
- { ref_.clear(0); }
- const space_T& operator()() const { return ref_; }
- ~fudge_isotropic_() { ref_.ensure_rank(0); }
-- mutable space_T& ref_;
-+ space_T& ref_;
- };
- template<> struct fudge_isotropic_<double> {
- fudge_isotropic_(double v) : v_(v) {};
diff --git a/sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.7.patch b/sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.7.patch
deleted file mode 100644
index 633c9d50cf94..000000000000
--- a/sci-libs/libcmatrix/files/libcmatrix-3.2.1-gcc4.7.patch
+++ /dev/null
@@ -1,227 +0,0 @@
- include/MultiMatrix.h | 14 +++++++-------
- include/UnionHolder.h | 40 ++++++++++++++++++++--------------------
- include/basedefs.h | 22 ++++++++++++----------
- utils/Fork_controller.cc | 3 +++
- utils/ttyio.cc | 2 ++
- 5 files changed, 44 insertions(+), 37 deletions(-)
-
-diff --git a/include/MultiMatrix.h b/include/MultiMatrix.h
-index b6fec33..2d54db5 100755
---- a/include/MultiMatrix.h
-+++ b/include/MultiMatrix.h
-@@ -254,19 +254,19 @@ namespace libcmatrix {
- }
-
- size_t operator()(size_t r) const
-- { check_bounds_open(dim,r);
-+ { this->check_bounds_open(dim,r);
- return r*mults[0]; }
-
- size_t operator()(size_t r,size_t s) const
-- { check_bounds_open(dim,r,s);
-+ { this->check_bounds_open(dim,r,s);
- return r*mults[0]+s*mults[1]; }
-
- size_t operator()(size_t r,size_t s,size_t t) const
-- { check_bounds_open(dim,r,s,t);
-+ { this->check_bounds_open(dim,r,s,t);
- return r*mults[0]+s*mults[1]+t*mults[2]; }
-
- size_t operator()(size_t r,size_t s,size_t t,size_t u) const
-- { check_bounds_open(dim,r,s,t,u);
-+ { this->check_bounds_open(dim,r,s,t,u);
- return r*mults[0]+s*mults[1]+t*mults[2]+u*mults[3]; }
-
- size_t index(size_t r) const
-@@ -293,14 +293,14 @@ namespace libcmatrix {
-
- void reverse(size_t& r, size_t& s, size_t ind) const {
- LCM_STATIC_CHECK(N==2, Indexer_non2D_object);
-- check(ind<size(),"Indexer::reverse");
-+ this->check(ind<size(),"Indexer::reverse");
- r=ind / mults[0];
- s=ind-r*mults[0];
- }
-
- void reverse(size_t& r, size_t& s, size_t& t, size_t ind) const {
- LCM_STATIC_CHECK(N==3, Indexer_non3D_object);
-- check(ind<size(),"Indexer::reverse");
-+ this->check(ind<size(),"Indexer::reverse");
- r=ind / mults[0];
- ind-=r*mults[0];
- s=ind / mults[1];
-@@ -309,7 +309,7 @@ namespace libcmatrix {
-
- void reverse(size_t& r, size_t& s, size_t& t, size_t& u, size_t ind) const {
- LCM_STATIC_CHECK(N==4, Indexer_non4D_object);
-- check(ind<size(),"Indexer::reverse");
-+ this->check(ind<size(),"Indexer::reverse");
- r=ind / mults[0];
- ind-=r*mults[0];
- s=ind / mults[1];
-diff --git a/include/UnionHolder.h b/include/UnionHolder.h
-index f447501..3157330 100755
---- a/include/UnionHolder.h
-+++ b/include/UnionHolder.h
-@@ -359,21 +359,21 @@ namespace libcmatrix {
- //! overrides ::clear method from ::CommonHolder
- void clear() {
- switch (type_) {
-- case 1: clear_(first_); break;
-- case 2: clear_(second_); break;
-- case 3: clear_(third_); break;
-- case 4: clear_(fourth_); break;
-- case 5: clear_(fifth_); break;
-- case 6: clear_(sixth_); break;
-- case 7: clear_(seventh_); break;
-- case 8: clear_(eighth_); break;
-- case 9: clear_(nineth_); break;
-+ case 1: this->clear_(first_); break;
-+ case 2: this->clear_(second_); break;
-+ case 3: this->clear_(third_); break;
-+ case 4: this->clear_(fourth_); break;
-+ case 5: this->clear_(fifth_); break;
-+ case 6: this->clear_(sixth_); break;
-+ case 7: this->clear_(seventh_); break;
-+ case 8: this->clear_(eighth_); break;
-+ case 9: this->clear_(nineth_); break;
- }
- type_=0;
- }
-
- template<class T> UnionHolder& operator= (const T& v) {
-- get(Type2Type<T>())=v;
-+ this->get(Type2Type<T>())=v;
- type(Type2Type<T>()); //only change type if assignment was successful
- return *this;
- }
-@@ -399,12 +399,12 @@ namespace libcmatrix {
-
- template<class T> T& set(Type2Type<T> in) {
- type(in);
-- return get(in);
-+ return this->get(in);
- }
-
- template<int M> typename reverse<M>::type& set(Int2Type<M> in) {
- type(in);
-- return get(Type2Type<typename reverse<M>::type>());
-+ return this->get(Type2Type<typename reverse<M>::type>());
- }
-
- template<class T> T& operator()(Type2Type<T> in) {
-@@ -429,12 +429,12 @@ namespace libcmatrix {
-
- template<int M> typename reverse<M>::type& operator()(Int2Type<M> in) {
- verify(in);
-- return get(Type2Type<typename reverse<M>::type>());
-+ return this->get(Type2Type<typename reverse<M>::type>());
- }
-
- template<int M> const typename reverse<M>::type& operator()(Int2Type<M> in) const {
- verify(in);
-- return get(Type2Type<typename reverse<M>::type>());
-+ return this->get(Type2Type<typename reverse<M>::type>());
- }
- };
-
-@@ -482,12 +482,12 @@ namespace libcmatrix {
- bool iscomplex() const { return (this->type()==COMPLEX); }
- bool isreal() const { return (this->type()==REAL); }
-
-- C& set_complex() { return set(Int2Type<COMPLEX>()); }
-- R& set_real() { return set(Int2Type<REAL>()); }
-- const C& get_complex() const { return get(Type2Type<C>()); }
-- const R& get_real() const { return get(Type2Type<R>()); }
-- C& get_complex() { return get(Type2Type<C>()); }
-- R& get_real() { return get(Type2Type<R>()); }
-+ C& set_complex() { return this->set(Int2Type<COMPLEX>()); }
-+ R& set_real() { return this->set(Int2Type<REAL>()); }
-+ const C& get_complex() const { return this->get(Type2Type<C>()); }
-+ const R& get_real() const { return this->get(Type2Type<R>()); }
-+ C& get_complex() { return this->get(Type2Type<C>()); }
-+ R& get_real() { return this->get(Type2Type<R>()); }
- };
-
- } //namespace libcmatrix
-diff --git a/include/basedefs.h b/include/basedefs.h
-index 420b341..80d47e3 100755
---- a/include/basedefs.h
-+++ b/include/basedefs.h
-@@ -13,6 +13,8 @@
- #include <functional>
- #include <iterator>
- #include <algorithm>
-+#include <math.h>
-+//#include "BlockedMatrix.h"
- //#include <complex>
-
- // #ifdef LCM_DEBUG_ALLOCATOR
-@@ -1703,6 +1705,16 @@ template<size_t N> struct Multiply_<N,N,0> {
- }
- };
-
-+template<size_t,size_t,size_t> struct Mla_ {
-+ template<class T1,class T2,class T3> static void func(T1&, const T2&, const T3&) {
-+ LCM_STATIC_ERROR( mla_incompatible_dimensionalities );
-+ }
-+};
-+
-+template<class T1,class T2,class T3> inline void mla(T1& d,const T2& a,const T3& b) {
-+ Mla_<LCM_DIM(T1),LCM_DIM(T2),LCM_DIM(T3)>::func(d,a,b);
-+}
-+
- template<> struct Multiply_<2,2,2> {
- template<class T1,class T2,class T3> static void func(T1& dest,const T2& a,const T3& b)
- {
-@@ -1875,12 +1887,6 @@ template<> struct Multiply_<0,0,0> {
- Multiply_<LCM_DIM(T1),LCM_DIM(T2),LCM_DIM(T3)>::func(d,a,b);
- }
-
--template<size_t,size_t,size_t> struct Mla_ {
-- template<class T1,class T2,class T3> static void func(T1&, const T2&, const T3&) {
-- LCM_STATIC_ERROR( mla_incompatible_dimensionalities );
-- }
--};
--
- template<size_t N> struct Mla_<N,0,N> {
- template<class T1,class T2,class T3> LCM_INLINE static void func(T1& d, const T2& a, const T3& b) {
- if (d.empty())
-@@ -1940,10 +1946,6 @@ template<> struct Mla_<0,0,0> {
- }
- };
-
--template<class T1,class T2,class T3> inline void mla(T1& d,const T2& a,const T3& b) {
-- Mla_<LCM_DIM(T1),LCM_DIM(T2),LCM_DIM(T3)>::func(d,a,b);
--}
--
- template<class T,size_t N> struct Print_ {
- static void print(const T& a,std::ostream& ostr) {
- ostr << '[';
-diff --git a/utils/Fork_controller.cc b/utils/Fork_controller.cc
-index 5f6b913..08ec942 100755
---- a/utils/Fork_controller.cc
-+++ b/utils/Fork_controller.cc
-@@ -3,6 +3,9 @@
- #include <sys/wait.h>
- #include <time.h>
- #include <cstdio>
-+#include <sys/types.h>
-+#include <unistd.h>
-+
-
- namespace libcmatrix {
-
-diff --git a/utils/ttyio.cc b/utils/ttyio.cc
-index 17e4eb3..bbeac81 100755
---- a/utils/ttyio.cc
-+++ b/utils/ttyio.cc
-@@ -17,6 +17,8 @@
- #include "args_iter.h"
- #endif
-
-+#include <unistd.h>
-+
- namespace libcmatrix {
-
- namespace {
diff --git a/sci-libs/libcmatrix/files/libcmatrix-3.2.1-minuit2.patch b/sci-libs/libcmatrix/files/libcmatrix-3.2.1-minuit2.patch
deleted file mode 100644
index e7a6cec644bf..000000000000
--- a/sci-libs/libcmatrix/files/libcmatrix-3.2.1-minuit2.patch
+++ /dev/null
@@ -1,14 +0,0 @@
---- a/configure-libraries.ac
-+++ b/configure-libraries.ac
-@@ -14,8 +14,8 @@
- fi
- if test x$FOUNDMINUIT = xyes; then
- AC_CHECK_LIB(lcg_Minuit,main,,
-- AC_CHECK_LIB(Minuit,main,,FOUNDMINUIT=no
-- AC_MSG_WARN([Minuit library (liblcg_Minuit or libMinuit) not found
-+ AC_CHECK_LIB(Minuit2,main,,FOUNDMINUIT=no
-+ AC_MSG_WARN([Minuit library (liblcg_Minuit or libMinuit2) not found
- Is LDFLAGS is defined to include relevant directory?])))
- if test x$FOUNDMINUIT = xyes; then
- AC_DEFINE(HAVE_LIBMINUIT)
-
diff --git a/sci-libs/libcmatrix/files/libcmatrix-3.9.0-atlas.patch b/sci-libs/libcmatrix/files/libcmatrix-3.9.0-atlas.patch
deleted file mode 100644
index 329e794645eb..000000000000
--- a/sci-libs/libcmatrix/files/libcmatrix-3.9.0-atlas.patch
+++ /dev/null
@@ -1,24 +0,0 @@
- configure-libraries.ac | 3 ++-
- 1 files changed, 2 insertions(+), 1 deletions(-)
-
-diff --git a/configure-libraries.ac b/configure-libraries.ac
-index 6e9579d..a919398 100755
---- a/configure-libraries.ac
-+++ b/configure-libraries.ac
-@@ -33,6 +33,7 @@ AC_ARG_WITH(atlas,
- AS_HELP_STRING([--with-atlas],[use the ATLAS BLAS library (default-use if found)]),,with_atlas=check)
- if test x$with_atlas != xno; then
- FOUNDATLAS=yes
-+ PKG_CHECK_MODULES([ATLAS], [cblas])
- AC_CHECK_HEADERS(cblas.h,,FOUNDATLAS=no
- AC_MSG_WARN([ATLAS header files (cblas.h) not found
- Is CPPFLAGS is defined to include relevant directory?]))
-@@ -40,7 +41,7 @@ Is CPPFLAGS is defined to include relevant directory?]))
- AC_MSG_WARN([ATLAS library (libatlas.a) not found
- Is LDFLAGS is defined to include relevant directory?]))
- if test x$FOUNDATLAS = xyes; then
-- LIBS="-lcblas $LIBS"
-+ LIBS="$ATLAS_LIBS $LIBS"
- CXXFLAGS="$CXXFLAGS -DLCM_USE_EXTERNAL"
- else
- if test x$with_atlas = xyes; then
diff --git a/sci-libs/libcmatrix/libcmatrix-3.11.0-r1.ebuild b/sci-libs/libcmatrix/libcmatrix-3.11.0-r1.ebuild
deleted file mode 100644
index 87813567028c..000000000000
--- a/sci-libs/libcmatrix/libcmatrix-3.11.0-r1.ebuild
+++ /dev/null
@@ -1,59 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools
-
-MY_P="${PN}${PV}_lite"
-
-DESCRIPTION="lite version of pNMRsim"
-HOMEPAGE="http://www.dur.ac.uk/paul.hodgkinson/pNMRsim/"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.gz"
-
-LICENSE="all-rights-reserved"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="cpu_flags_x86_sse threads"
-
-RDEPEND="sci-libs/minuit"
-DEPEND="${RDEPEND}"
-
-RESTRICT="mirror"
-
-S="${WORKDIR}/${PN}R3"
-
-DOCS=( CHANGES docs/cmatrix.pdf )
-PATCHES=(
- "${FILESDIR}/${PN}-3.11.0-shared.patch"
- "${FILESDIR}/${PN}-3.2.1-minuit2.patch"
- "${FILESDIR}/${PN}-3.2.1-gcc4.4.patch"
- "${FILESDIR}/${PN}-3.2.1-gcc4.6.patch"
- "${FILESDIR}/${PN}-3.2.1-gcc4.7.patch"
- "${FILESDIR}/${PN}-3.9.0-atlas.patch"
- "${FILESDIR}/${PN}-3.11.0-gcc5.2.patch"
- "${FILESDIR}/${PN}-3.11.0-fix-c++14.patch"
-)
-
-src_prepare() {
- default
- eautoreconf
-}
-
-src_configure() {
- econf \
- --with-minuit \
- --without-atlas \
- --with-sysroot="${ESYSROOT}" \
- $(use_with cpu_flags_x86_sse sse) \
- $(use_with threads)
-}
-
-src_install() {
- dolib.so lib/*.so*
-
- insinto /usr/include/${PN}R3
- doins -r include/.
-
- einstalldocs
-}
diff --git a/sci-libs/libcmatrix/metadata.xml b/sci-libs/libcmatrix/metadata.xml
deleted file mode 100644
index 7d3acaf5d252..000000000000
--- a/sci-libs/libcmatrix/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci@gentoo.org</email>
- <name>Gentoo Science Project</name>
- </maintainer>
-</pkgmetadata>