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Diffstat (limited to 'sci-biology/mrbayes/mrbayes-3.2.7.ebuild')
| -rw-r--r-- | sci-biology/mrbayes/mrbayes-3.2.7.ebuild | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/sci-biology/mrbayes/mrbayes-3.2.7.ebuild b/sci-biology/mrbayes/mrbayes-3.2.7.ebuild new file mode 100644 index 000000000000..ad87554eb31e --- /dev/null +++ b/sci-biology/mrbayes/mrbayes-3.2.7.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DESCRIPTION="Bayesian Inference of Phylogeny" +HOMEPAGE="https://nbisweden.github.io/MrBayes/" +SRC_URI="https://github.com/NBISweden/MrBayes/releases/download/v${PV}/${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris" +IUSE="debug mpi readline" +# --with-readline was given, but MPI support requires readline to be disabled. +REQUIRED_USE="mpi? ( !readline )" + +DEPEND=" + sys-libs/ncurses:= + mpi? ( virtual/mpi ) + readline? ( sys-libs/readline:= ) +" +RDEPEND="${DEPEND}" + +src_configure() { + econf \ + "$(use_with mpi)" \ + "$(use_with readline)" \ + "$(use_enable debug )" \ + # configure checks cpuid and enables fma{3,4}, sse{1..4} if detected. + # Configure options only allow disabling the auto-detection, but do not + # actually allow toggling the individual cpu instruction sets. The only + # way to guarantee that cross-compiling and binpkgs will work on machines + # other than the host is to unconditionally disable sse/fma/avx. + #"$(use_enable cpu_flags_x86_sse sse )" \ + #"$(use_enable cpu_flags_x86_avx avx )" \ + #"$(use_enable cpu_flags_x86_fma3 fma )" \ + # Has optional support for sci-biology/beagle::science + # "$(use_with beagle)" +} + +src_compile() { + # The --disable options for the cpu instruction sets don't actually work so + # we override it here and also set the user specified CFLAGS. + emake SIMD_FLAGS= CPUEXT_FLAGS= CFLAGS="${CFLAGS}" +} |