summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorRobin H. Johnson <robbat2@gentoo.org>2015-08-08 13:49:04 -0700
committerRobin H. Johnson <robbat2@gentoo.org>2015-08-08 17:38:18 -0700
commit56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch)
tree3f91093cdb475e565ae857f1c5a7fd339e2d781e /sci-libs/parmetis
downloadgentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.gz
gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.bz2
gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.zip
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'sci-libs/parmetis')
-rw-r--r--sci-libs/parmetis/Manifest1
-rw-r--r--sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch298
-rw-r--r--sci-libs/parmetis/metadata.xml13
-rw-r--r--sci-libs/parmetis/parmetis-3.2.0.ebuild41
4 files changed, 353 insertions, 0 deletions
diff --git a/sci-libs/parmetis/Manifest b/sci-libs/parmetis/Manifest
new file mode 100644
index 000000000000..10ac1a33b360
--- /dev/null
+++ b/sci-libs/parmetis/Manifest
@@ -0,0 +1 @@
+DIST ParMetis-3.2.0.tar.gz 5291841 SHA256 35e8b869d70b6478e0d5f4f51efba00c4783a5020ec90c6a7e7a63a56f141bde SHA512 be7e5affa6ed687c7e8cbef51c5f4838e6302aa7632796f337ed079f15361569d77aa73fc61b876b5c9973e974575571fd1e3e6c73505480b1ecdb7cf801a0d0 WHIRLPOOL a67356fa49780167be929ef393cd8f5168d7f8276c9c2ba4932dd382c6c45c7a23b53085df18be05fbdb2764d06465b82f2f8d8a15bfbf5a0ef8f50321fd5237
diff --git a/sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch b/sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch
new file mode 100644
index 000000000000..d38a2f7575cf
--- /dev/null
+++ b/sci-libs/parmetis/files/parmetis-3.1.1-autotools.patch
@@ -0,0 +1,298 @@
+--- configure.ac 1970-01-01 01:00:00.000000000 +0100
++++ configure.ac 2009-03-14 11:37:58.804041439 +0000
+@@ -0,0 +1,18 @@
++# -*- Autoconf -*-
++AC_PREREQ(2.59)
++AC_INIT(parmetis, 3.1.1, karypis@cs.umn.edu)
++AM_INIT_AUTOMAKE([foreign])
++AC_CONFIG_HEADER([config.h])
++AC_PROG_INSTALL
++AC_PROG_LIBTOOL
++AC_CHECK_LIB(m, sqrt)
++sinclude(ax_mpi.m4)
++AC_LANG_PUSH([C])
++AX_MPI([], AC_MSG_ERROR([could not compile an mpi test program]))
++AC_CONFIG_FILES([Makefile
++ metis.pc
++ parmetis.pc
++ ParMETISLib/Makefile
++ METISLib/Makefile
++ Programs/Makefile])
++AC_OUTPUT
+--- Makefile.am 1970-01-01 01:00:00.000000000 +0100
++++ Makefile.am 2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,5 @@
++SUBDIRS = METISLib ParMETISLib Programs
++EXTRA_DIST = CHANGES VERSION parmetis.pc.in metis.pc.in
++include_HEADERS = parmetis.h
++pkgconfigdir = $(libdir)/pkgconfig
++pkgconfig_DATA = metis.pc parmetis.pc
+--- METISLib/Makefile.am 1970-01-01 01:00:00.000000000 +0100
++++ METISLib/Makefile.am 2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,18 @@
++pkginclude_HEADERS = defs.h macros.h metis.h proto.h rename.h \
++ stdheaders.h struct.h
++pkgincludedir = $(includedir)/metis
++
++lib_LTLIBRARIES = libmetis.la
++libmetis_la_SOURCES = \
++ coarsen.c fm.c initpart.c match.c ccgraph.c \
++ pmetis.c pqueue.c refine.c util.c timing.c debug.c \
++ bucketsort.c graph.c stat.c kmetis.c kwayrefine.c \
++ kwayfm.c balance.c ometis.c srefine.c sfm.c separator.c \
++ mincover.c mmd.c mesh.c meshpart.c frename.c fortran.c \
++ myqsort.c compress.c parmetis.c estmem.c \
++ mpmetis.c mcoarsen.c mmatch.c minitpart.c mbalance.c \
++ mutil.c mkmetis.c mkwayrefine.c mkwayfmh.c \
++ mrefine2.c minitpart2.c mbalance2.c mfm2.c \
++ kvmetis.c kwayvolrefine.c kwayvolfm.c subdomains.c \
++ mfm.c memory.c mrefine.c checkgraph.c
++libmetis_la_LDFLAGS = -no-undefined -version-info 4:1:0
+--- metis.pc.in 1970-01-01 01:00:00.000000000 +0100
++++ metis.pc.in 2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,10 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: METIS
++Description: Software for unstructured graph partitioning
++Version: @VERSION@
++Libs: -L${libdir} -lmetis
++Cflags: -I${includedir}/metis
+--- ParMETISLib/Makefile.am 1970-01-01 01:00:00.000000000 +0100
++++ ParMETISLib/Makefile.am 2009-03-14 11:57:08.006017954 +0000
+@@ -0,0 +1,21 @@
++pkginclude_HEADERS = defs.h macros.h parmetislib.h proto.h \
++ rename.h stdheaders.h struct.h
++pkgincludedir = $(includedir)/parmetis
++
++lib_LTLIBRARIES = libparmetis.la
++libparmetis_la_SOURCES = \
++ comm.c util.c debug.c setup.c grsetup.c timer.c \
++ node_refine.c initmsection.c order.c \
++ xyzpart.c pspases.c frename.c \
++ iintsort.c iidxsort.c ikeysort.c ikeyvalsort.c \
++ kmetis.c gkmetis.c ometis.c \
++ initpart.c match.c \
++ kwayfm.c kwayrefine.c kwaybalance.c \
++ remap.c stat.c fpqueue.c \
++ ametis.c rmetis.c lmatch.c initbalance.c \
++ mdiffusion.c diffutil.c wave.c \
++ csrmatch.c redomylink.c balancemylink.c \
++ selectq.c akwayfm.c serial.c move.c \
++ mmetis.c mesh.c memory.c weird.c backcompat.c
++libparmetis_la_LDFLAGS = -no-undefined -version-info 3:1:1
++libparmetis_la_LIBADD = @MPILIBS@ $(top_builddir)/METISLib/libmetis.la
+--- parmetis.pc.in 1970-01-01 01:00:00.000000000 +0100
++++ parmetis.pc.in 2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,11 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: ParMETIS
++Description: Software for parallel (mpi) unstructured graph partitioning
++Version: @VERSION@
++Requires: metis
++Libs: -L${libdir} -lparmetis
++Cflags: -I${includedir}
+--- Programs/Makefile.am 1970-01-01 01:00:00.000000000 +0100
++++ Programs/Makefile.am 2009-03-14 11:37:15.700900498 +0000
+@@ -0,0 +1,13 @@
++AM_CPPFLAGS = -I$(top_srcdir)/ParMETISLib
++LDADD = $(top_builddir)/METISLib/libmetis.la \
++ $(top_builddir)/ParMETISLib/libparmetis.la
++
++check_PROGRAMS = ptest mtest
++ptest_SOURCES = ptest.c io.c adaptgraph.c
++mtest_SOURCES = mtest.c io.c
++
++MPIRUN = mpirun -np 2
++
++check-local: $(check_PROGRAMS)
++ $(MPIRUN) ptest ../Graphs/rotor.graph
++ $(MPIRUN) mtest ../Graphs/bricks.hex3d 2
+--- ax_mpi.m4 1970-01-01 01:00:00.000000000 +0100
++++ ax_mpi.m4 2010-01-20 20:33:15.000000000 +0000
+@@ -0,0 +1,178 @@
++# ===========================================================================
++# http://www.nongnu.org/autoconf-archive/ax_mpi.html
++# ===========================================================================
++#
++# SYNOPSIS
++#
++# AX_MPI([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
++#
++# DESCRIPTION
++#
++# This macro tries to find out how to compile programs that use MPI
++# (Message Passing Interface), a standard API for parallel process
++# communication (see http://www-unix.mcs.anl.gov/mpi/)
++#
++# On success, it sets the MPICC, MPICXX, MPIF77, or MPIFC output variable
++# to the name of the MPI compiler, depending upon the current language.
++# (This may just be $CC/$CXX/$F77/$FC, but is more often something like
++# mpicc/mpiCC/mpif77/mpif90.) It also sets MPILIBS to any libraries that
++# are needed for linking MPI (e.g. -lmpi or -lfmpi, if a special
++# MPICC/MPICXX/MPIF77/MPIFC was not found).
++#
++# If you want to compile everything with MPI, you should set:
++#
++# CC="MPICC" #OR# CXX="MPICXX" #OR# F77="MPIF77" #OR# FC="MPIFC"
++# LIBS="$MPILIBS $LIBS"
++#
++# NOTE: The above assumes that you will use $CC (or whatever) for linking
++# as well as for compiling. (This is the default for automake and most
++# Makefiles.)
++#
++# The user can force a particular library/compiler by setting the
++# MPICC/MPICXX/MPIF77/MPIFC and/or MPILIBS environment variables.
++#
++# ACTION-IF-FOUND is a list of shell commands to run if an MPI library is
++# found, and ACTION-IF-NOT-FOUND is a list of commands to run if it is not
++# found. If ACTION-IF-FOUND is not specified, the default action will
++# define HAVE_MPI.
++#
++# LICENSE
++#
++# Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
++# Copyright (c) 2008 Julian C. Cummings <cummings@cacr.caltech.edu>
++#
++# This program is free software: you can redistribute it and/or modify it
++# under the terms of the GNU General Public License as published by the
++# Free Software Foundation, either version 3 of the License, or (at your
++# option) any later version.
++#
++# This program is distributed in the hope that it will be useful, but
++# WITHOUT ANY WARRANTY; without even the implied warranty of
++# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
++# Public License for more details.
++#
++# You should have received a copy of the GNU General Public License along
++# with this program. If not, see <http://www.gnu.org/licenses/>.
++#
++# As a special exception, the respective Autoconf Macro's copyright owner
++# gives unlimited permission to copy, distribute and modify the configure
++# scripts that are the output of Autoconf when processing the Macro. You
++# need not follow the terms of the GNU General Public License when using
++# or distributing such scripts, even though portions of the text of the
++# Macro appear in them. The GNU General Public License (GPL) does govern
++# all other use of the material that constitutes the Autoconf Macro.
++#
++# This special exception to the GPL applies to versions of the Autoconf
++# Macro released by the Autoconf Archive. When you make and distribute a
++# modified version of the Autoconf Macro, you may extend this special
++# exception to the GPL to apply to your modified version as well.
++
++AU_ALIAS([ACX_MPI], [AX_MPI])
++AC_DEFUN([AX_MPI], [
++AC_PREREQ(2.50) dnl for AC_LANG_CASE
++
++AC_LANG_CASE([C], [
++ AC_REQUIRE([AC_PROG_CC])
++ AC_ARG_VAR(MPICC,[MPI C compiler command])
++ AC_CHECK_PROGS(MPICC, mpicc hcc mpxlc_r mpxlc mpcc cmpicc, $CC)
++ ax_mpi_save_CC="$CC"
++ CC="$MPICC"
++ AC_SUBST(MPICC)
++],
++[C++], [
++ AC_REQUIRE([AC_PROG_CXX])
++ AC_ARG_VAR(MPICXX,[MPI C++ compiler command])
++ AC_CHECK_PROGS(MPICXX, mpic++ mpicxx mpiCC hcp mpxlC_r mpxlC mpCC cmpic++, $CXX)
++ ax_mpi_save_CXX="$CXX"
++ CXX="$MPICXX"
++ AC_SUBST(MPICXX)
++],
++[Fortran 77], [
++ AC_REQUIRE([AC_PROG_F77])
++ AC_ARG_VAR(MPIF77,[MPI Fortran 77 compiler command])
++ AC_CHECK_PROGS(MPIF77, mpif77 hf77 mpxlf_r mpxlf mpf77 cmpifc, $F77)
++ ax_mpi_save_F77="$F77"
++ F77="$MPIF77"
++ AC_SUBST(MPIF77)
++],
++[Fortran], [
++ AC_REQUIRE([AC_PROG_FC])
++ AC_ARG_VAR(MPIFC,[MPI Fortran compiler command])
++ AC_CHECK_PROGS(MPIFC, mpif90 mpxlf95_r mpxlf90_r mpxlf95 mpxlf90 mpf90 cmpif90c, $FC)
++ ax_mpi_save_FC="$FC"
++ FC="$MPIFC"
++ AC_SUBST(MPIFC)
++])
++
++if test x = x"$MPILIBS"; then
++ AC_LANG_CASE([C], [AC_CHECK_FUNC(MPI_Init, [MPILIBS=" "])],
++ [C++], [AC_CHECK_FUNC(MPI_Init, [MPILIBS=" "])],
++ [Fortran 77], [AC_MSG_CHECKING([for MPI_Init])
++ AC_LINK_IFELSE([AC_LANG_PROGRAM([],[ call MPI_Init])],[MPILIBS=" "
++ AC_MSG_RESULT(yes)], [AC_MSG_RESULT(no)])],
++ [Fortran], [AC_MSG_CHECKING([for MPI_Init])
++ AC_LINK_IFELSE([AC_LANG_PROGRAM([],[ call MPI_Init])],[MPILIBS=" "
++ AC_MSG_RESULT(yes)], [AC_MSG_RESULT(no)])])
++fi
++AC_LANG_CASE([Fortran 77], [
++ if test x = x"$MPILIBS"; then
++ AC_CHECK_LIB(fmpi, MPI_Init, [MPILIBS="-lfmpi"])
++ fi
++ if test x = x"$MPILIBS"; then
++ AC_CHECK_LIB(fmpich, MPI_Init, [MPILIBS="-lfmpich"])
++ fi
++],
++[Fortran], [
++ if test x = x"$MPILIBS"; then
++ AC_CHECK_LIB(fmpi, MPI_Init, [MPILIBS="-lfmpi"])
++ fi
++ if test x = x"$MPILIBS"; then
++ AC_CHECK_LIB(mpichf90, MPI_Init, [MPILIBS="-lmpichf90"])
++ fi
++])
++if test x = x"$MPILIBS"; then
++ AC_CHECK_LIB(mpi, MPI_Init, [MPILIBS="-lmpi"])
++fi
++if test x = x"$MPILIBS"; then
++ AC_CHECK_LIB(mpich, MPI_Init, [MPILIBS="-lmpich"])
++fi
++
++dnl We have to use AC_TRY_COMPILE and not AC_CHECK_HEADER because the
++dnl latter uses $CPP, not $CC (which may be mpicc).
++AC_LANG_CASE([C], [if test x != x"$MPILIBS"; then
++ AC_MSG_CHECKING([for mpi.h])
++ AC_TRY_COMPILE([#include <mpi.h>],[],[AC_MSG_RESULT(yes)], [MPILIBS=""
++ AC_MSG_RESULT(no)])
++fi],
++[C++], [if test x != x"$MPILIBS"; then
++ AC_MSG_CHECKING([for mpi.h])
++ AC_TRY_COMPILE([#include <mpi.h>],[],[AC_MSG_RESULT(yes)], [MPILIBS=""
++ AC_MSG_RESULT(no)])
++fi],
++[Fortran 77], [if test x != x"$MPILIBS"; then
++ AC_MSG_CHECKING([for mpif.h])
++ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],[ include 'mpif.h'])],[AC_MSG_RESULT(yes)], [MPILIBS=""
++ AC_MSG_RESULT(no)])
++fi],
++[Fortran], [if test x != x"$MPILIBS"; then
++ AC_MSG_CHECKING([for mpif.h])
++ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([],[ include 'mpif.h'])],[AC_MSG_RESULT(yes)], [MPILIBS=""
++ AC_MSG_RESULT(no)])
++fi])
++
++AC_LANG_CASE([C], [CC="$ax_mpi_save_CC"],
++ [C++], [CXX="$ax_mpi_save_CXX"],
++ [Fortran 77], [F77="$ax_mpi_save_F77"],
++ [Fortran], [FC="$ax_mpi_save_FC"])
++
++AC_SUBST(MPILIBS)
++
++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
++if test x = x"$MPILIBS"; then
++ $2
++ :
++else
++ ifelse([$1],,[AC_DEFINE(HAVE_MPI,1,[Define if you have the MPI library.])],[$1])
++ :
++fi
++])dnl AX_MPI
diff --git a/sci-libs/parmetis/metadata.xml b/sci-libs/parmetis/metadata.xml
new file mode 100644
index 000000000000..878c86dda5f2
--- /dev/null
+++ b/sci-libs/parmetis/metadata.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci</herd>
+ <longdescription lang="en">
+ ParMETIS is an MPI-based parallel library that implements a variety
+ of algorithms for partitioning unstructured graphs and for computing
+ fill-reducing orderings of sparse matrices. ParMETIS extends the
+ functionality provided by METIS and includes routines that are
+ especially suited for parallel AMR computations and large scale
+ numerical simulations.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-libs/parmetis/parmetis-3.2.0.ebuild b/sci-libs/parmetis/parmetis-3.2.0.ebuild
new file mode 100644
index 000000000000..836c314e9a07
--- /dev/null
+++ b/sci-libs/parmetis/parmetis-3.2.0.ebuild
@@ -0,0 +1,41 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils autotools
+
+MYP=ParMetis-${PV}
+
+DESCRIPTION="Parallel graph partitioner"
+HOMEPAGE="http://www-users.cs.umn.edu/~karypis/metis/parmetis/"
+SRC_URI="http://glaros.dtc.umn.edu/gkhome/fetch/sw/${PN}/OLD/${MYP}.tar.gz"
+
+SLOT="0"
+LICENSE="free-noncomm"
+KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+IUSE="doc static-libs"
+
+DEPEND="virtual/mpi"
+RDEPEND="${DEPEND}
+ !sci-libs/metis"
+
+S="${WORKDIR}/${MYP}"
+
+src_prepare() {
+ epatch "${FILESDIR}"/${PN}-3.1.1-autotools.patch
+ sed -i -e "s/3.1.1/${PV}/" configure.ac || die
+ sed -i -e 's/order.c//' -e 's/lmatch.c//' ParMETISLib/Makefile.am || die
+ eautoreconf
+ export CC=mpicc
+}
+
+src_configure() {
+ econf $(use_enable static-libs static)
+}
+
+src_install() {
+ default
+ use doc && dodoc Manual/*.pdf
+}