sci-mathematics/isabelle: Remove old

Package-Manager: portage-2.3.3

8 files changed, 0 insertions, 468 deletions

diff --git a/sci-mathematics/isabelle/Manifest b/sci-mathematics/isabelle/Manifest
index 613468cd97ce..31fc29365a46 100644
--- a/sci-mathematics/isabelle/Manifest
+++ b/sci-mathematics/isabelle/Manifest
@@ -1,14 +1,10 @@
-DIST Isabelle2015.tar.gz 36529154 SHA256 08723d3be6f91c57a7a69a8624c54cc1e0cd31506988bf29ed365a5aa5a5156f SHA512 052bb80316a9345368a295a7c5f3869b58d71a6879548fc6240a04fd2cf8c11406274ead8a1ed098563ef9b7573a826656da543e745044fc1d275322af5cc212 WHIRLPOOL 0be4759a1064f4759c2f227b037c448093ff36b47e16002fbb7e99d2843583e01314c4ea5c7a8cbf4d1304f8f72a383052911e483d51e4af2e68c4c36dea5121
 DIST Isabelle2016-1.tar.gz 39567637 SHA256 79831f83df4f0275fbd64caf3cd3e170354809478139907f6e25ebc8fc4a083f SHA512 c7da7900033a8c816f002b8899e398da7819dc457b3b1176dc9a19adffeb42d5524f2d14581a391487da1f36ffeabd0867bacab6462f3decfc0f7a9caf81a2d2 WHIRLPOOL 98d8cd767e04a7c46d19c91886fd7a98ca935625454b57df4f968f874340aaa5a6184004c6879ebc1c35f971b4e5ff1a52f06e33e1d14e377dbce346e201d655
 DIST bash_process-isabelle-component-1.2.1.tar.gz 33182 SHA256 50ba6bed5a8fbcf26b9e9b090af783e1288daa9b6d2e67ec65e7de8621049bf4 SHA512 d9817191af5660e38f1647401803115a93f0052291bfbbcb1cd9b41a4bab89b3ebdde22b40744a04ad3268aed8ca037ae59981c513f71b3ff6d89855d29e14c3 WHIRLPOOL f8392e4df237e758568b3edd25b83b44b916a81f9a18f6d6dd931a084de9a915930ae9e65e39b7b39b80ab9f738fd112113c4c3496ef3433fd17efff2f51068a
 DIST csdp-isabelle-component-6.x.tar.gz 493 SHA256 65dde42fa476095052ca3820df4c0e45089653d4467a53de711c8e13670a1b19 SHA512 9be28ecbf61d0f6ad23e28d44bd7ceb8f06ab22f3a05a7c823a9c5bf52ddcf5e5c300c41e14451d6b8e6a4c32b1bbd17769c731cd890fab335a866cd5e735290 WHIRLPOOL c930c531637172e4c75ec44d68f71e69e748a8b976fa3651ef4015fb6a90e30b568bd092632dc16c6389aac09bc13f3249af6c3ac261f09ad2dc5ad915282f99
-DIST exec_process-isabelle-component-1.0.3.tar.gz 814 SHA256 ee3b7b299852bcfd0bf7ffce6c8cd2279f2d71247c4a7b0042971b31c2b2a89d SHA512 7880b7f9843ff5806ab37d938a817a5b33e973772d9a6c6cf76bf04076fb532309bd22dfaa203be7c72c07f5a638f0f97e730c414ed164024fd31f1f09fc7c09 WHIRLPOOL 9d9beb7a41baac8b591ceee31bb7b69e1dd07fce66757511649977f6a85d85eef525ba0be13b0873c1aef47de0eace8bf88283b4a136397000e61cfc81da8d4d
 DIST isabelle_fonts-isabelle-component-20160830.tar.gz 249427 SHA256 1e99293f2f77f906f32c3974becd7c4a9d474050d3ab78222e3e5f40fe3d8fce SHA512 a185f79990478861832e9400ea37ffd02f582d3f916d26d901b8b0ec923027c412538bafe4a763a132adb9277a4b00a7a510762928ec49433ef550ae3fe59dbc WHIRLPOOL c15a6df44fce1d5577a7642d7b659b4b202bfd148db35c2429ec8e6c2680e7f1302b6249792150f0563a4e9cd9c92325bedc33194c0c7cf5008f2a3f4677ef02
-DIST jedit_build-isabelle-component-20150228.tar.gz 10674317 SHA256 2bee3c5242a3ce4150656f106e658096e82b6bd966e04d590e20023a956be29b SHA512 ba2d0804f21cee596fc3528a592941efc393e98b890efe054aed18fc0d31edfe459047b58ed79b42892e219b4c35a4fb5c8cca0f402b96d641ff8ce62e321339 WHIRLPOOL b2971bdef70e32d858385cb58603d6a5a7e357dbbc9810569093a31332a7838387f43a76a65048a12f259f08de86f200e962ccf2deb2bd3cd4e83dc4c1e41d8b
 DIST jedit_build-isabelle-component-20161024.tar.gz 10819946 SHA256 5b3cc4d2916a77ceef1b7aea80c3ade715795d2c2359f4f8f73b32e334c3f22e SHA512 0563b696307dd33b244e4ecc62664056a2b003c3291a5e3d7dd4f1c936dac2c3257ff90273cb2c8dc3bf9dea40fae745fabb57fc5f4ed420d0c8fd7d2b917433 WHIRLPOOL 46edf80819abef2c900a2d0dfb20530685678c25780a56946f8fa4af66abb047cfdcab17a7bb9700e60028e5465d93c227d7515084f6020546c781419d91cc03
 DIST jfreechart-isabelle-component-1.0.14-1.tar.gz 3444825 SHA256 b0eb7365c4c5877379889100f081a4afc4117afc0d332941c3dd01bef2c4aee9 SHA512 ee1d84a45e43029d5e3acee823176196da19789322e8d3c2c81d5504930ad81d50e16e5da87655e4151034901daefb4ce6b82334839e39134b3a7ce32203aa67 WHIRLPOOL e6f9caadb802ecb5b784e86e96c008e9271aa0b1c940152fb0b0358280d9c1e274bb0dee1507f8ff0fe7f43f863db538d631c76e146d1f66ab6e8a8fb27eb42d
 DIST jortho-isabelle-component-1.0-2.tar.gz 1723761 SHA256 cf004d735252dcdc00ff6d3c9b5cc400f56bc8b7eb49ed9a3227f12779639bad SHA512 8bef5e025d13b76c86a727bf93887b846cc906b2ce00299c38f69ccf33fb9dc7411e55b6fd1c56ed993c180d83a7e9ed90122f7feb6ae4fb70df93802ac21211 WHIRLPOOL 2a9aae3dcc62c52c194f17d0b5e59d710bd8efdb9e75ed6dd9fa68746a9bbc5178a218e405d7a23bf15d3957c3e1a8543ccdeb04f8556b05b8802aed47d8e537
-DIST polyml-isabelle-component-5.5.2-3.tar.gz 691 SHA256 1ba253974193efc70711b7fe32cc831d8bcc13107b0b130ddf6087bb6ff6d3e7 SHA512 45d68fa7a07ae9fc39cb21fa4c4c43a34576377fb828c8652002c56cc9ec7b3c7b5fcefb7604fc4bc90ce4868dd2fca41ddf37ce285da4902664ab21e4657b3f WHIRLPOOL 3a85c59b1bb928c5ea91f8150c6ded5309fae96bd7558b56e6c3d8f04c418b03b57fb49565af5ed919179fd9e30c957575ca7b65d938ce69c5d3131d8c55ab1e
 DIST polyml-isabelle-component-5.6-1.tar.gz 822 SHA256 158d597bb103b173ce95b40f4a5ed3bf45fce9a7185be4240e0fb69dbb74431d SHA512 403239aa48aab8c39e12cd5f82cb5e3ba7c31f9325d88f5137d3ec509bb25ab4eb8b1103a66b8ea5ad45c7c968ef092749c486217528a5db4223819106c00a59 WHIRLPOOL 6a1f766c71543748cdeab6bc1e3e1e7b8ab81b49976bebf0ec72086be8f161cd23b913d28cf0f0386b8f33a7b9637427a2c57f1bd7adf58c8c0f58054f84a9db
 DIST ssh-java-isabelle-component-20161009.tar.gz 412919 SHA256 60d9448e664a357816e64e4d21ce0db9fb27354e8c64e1199c4be839b084145e SHA512 685a9b8791046c1bc21aa77614fb1b304e7438715377e179954ebfd1603434ff66fe23e90de928a5af6f51a48ae6ea6f05f9ff8941d98f7c3a43fdda02d3b519 WHIRLPOOL 3c5c666f86e08c81d75b13442a98b6eaa51418a8a55310e87c53e68480e31ec6050c1e2b3876a0a3e06c58e5e8c9735150408e8fd120a8d83b9827b9b84b2c7c
 DIST xz-java-isabelle-component-1.5.tar.gz 315 SHA256 e7fdd433608561c87558d4d0ee39166e8396ce11242e85391417ec7fd3ce7b8e SHA512 6dfec49e12c4cafbb6b6386dd54477e86b6bb419a77c52d9606a0305aeea9cd11f087ed6bba77352c7bf9ec656052ef617e845f472e57b5cdfbccf22b2eeb4fa WHIRLPOOL 9c1fc16db0adc88557b81608902d9d69007dc90d5849f4f7501101930842ce81ded76af0e76e38df8bd0b07d137e53bafaa338bf6c7ae338e97af2a1433d5c1d
diff --git a/sci-mathematics/isabelle/files/isabelle-2012-libsha1.patch b/sci-mathematics/isabelle/files/isabelle-2012-libsha1.patch
deleted file mode 100644
index 06933669de7f..000000000000
--- a/sci-mathematics/isabelle/files/isabelle-2012-libsha1.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- Isabelle2012-orig/src/Pure/General/sha1_polyml.ML	2012-05-20 19:34:33.000000000 +1000
-+++ Isabelle2012/src/Pure/General/sha1_polyml.ML	2012-12-05 23:24:06.263793934 +1100
-@@ -18,7 +18,7 @@
-   in (op ^) (pairself hex_digit (Integer.div_mod (Char.ord c) 16)) end
- 
- val lib_path =
--  ("$ML_HOME/" ^ (if ML_System.platform_is_cygwin then "sha1.dll" else "libsha1.so"))
-+  ("$SHA1_HOME/" ^ (if ML_System.platform_is_cygwin then "sha1.dll" else "libsha1.so"))
-   |> Path.explode;
- 
- fun digest_external str =
diff --git a/sci-mathematics/isabelle/files/isabelle-2013-gentoo-settings.patch b/sci-mathematics/isabelle/files/isabelle-2013-gentoo-settings.patch
deleted file mode 100644
index 7066c6b875a2..000000000000
--- a/sci-mathematics/isabelle/files/isabelle-2013-gentoo-settings.patch
+++ /dev/null
@@ -1,19 +0,0 @@
---- Isabelle2013-orig/etc/settings	2013-02-13 00:31:02.000000000 +1100
-+++ Isabelle2013/etc/settings	2013-08-17 14:47:46.045988000 +1000
-@@ -176,3 +176,16 @@
- #ISABELLE_GHC="/usr/bin/ghc"
- #ISABELLE_OCAML="/usr/bin/ocaml"
- #ISABELLE_SWIPL="/usr/bin/swipl"
-+
-+# Poly/ML Gentoo (x86_64)
-+ML_PLATFORM=x86_64-linux
-+ML_HOME="/usr/bin"
-+ML_SYSTEM=polyml-5.5.0
-+ML_OPTIONS="-H 1000"
-+ML_SOURCES="/usr/src/debug/dev-lang/polyml-5.5.0"
-+
-+# Proof General home
-+PROOFGENERAL_HOME="/usr/share/emacs/site-lisp/ProofGeneral"
-+PROOFGENERAL_OPTIONS=""
-+#PROOFGENERAL_OPTIONS="-m no_brackets -m no_type_brackets"
-+
diff --git a/sci-mathematics/isabelle/files/isabelle-2013.2-HOL-Predicate_Compile_Examples.patch b/sci-mathematics/isabelle/files/isabelle-2013.2-HOL-Predicate_Compile_Examples.patch
deleted file mode 100644
index e1253016837b..000000000000
--- a/sci-mathematics/isabelle/files/isabelle-2013.2-HOL-Predicate_Compile_Examples.patch
+++ /dev/null
@@ -1,89 +0,0 @@
---- Isabelle2013-2-orig/src/HOL/Predicate_Compile_Examples/Hotel_Example_Prolog.thy	2013-12-06 02:18:50.000000000 +1100
-+++ Isabelle2013-2/src/HOL/Predicate_Compile_Examples/Hotel_Example_Prolog.thy	2014-02-09 22:21:20.676081140 +1100
-@@ -87,7 +87,7 @@
- *}
- 
- lemma "\<lbrakk> hotel s; isinp s r g \<rbrakk> \<Longrightarrow> owns s r = Some g"
--quickcheck[tester = prolog, iterations = 1, expect = counterexample]
-+quickcheck[tester = prolog, iterations = 1]
- oops
- 
- section {* Manual setup to find the counterexample *}
-@@ -115,7 +115,7 @@
- 
- lemma
-   "hotel s ==> feels_safe s r ==> isinp s r g ==> owns s r = Some g"
--quickcheck[tester = prolog, iterations = 1, expect = counterexample]
-+quickcheck[tester = prolog, iterations = 1]
- oops
- 
- section {* Using a global limit for limiting the execution *} 
-@@ -151,7 +151,7 @@
- 
- lemma
-   "hotel s ==> feels_safe s r ==> isinp s r g ==> owns s r = Some g"
--quickcheck[tester = prolog, iterations = 1, expect = counterexample]
-+quickcheck[tester = prolog, iterations = 1]
- oops
- 
- end
-\ No newline at end of file
---- Isabelle2013-2-orig/src/HOL/Predicate_Compile_Examples/Context_Free_Grammar_Example.thy	2013-12-06 02:18:50.000000000 +1100
-+++ Isabelle2013-2/src/HOL/Predicate_Compile_Examples/Context_Free_Grammar_Example.thy	2014-02-09 22:27:26.826238011 +1100
-@@ -36,7 +36,7 @@
- 
- lemma
-   "S\<^sub>1p w \<Longrightarrow> w = []"
--quickcheck[tester = prolog, iterations=1, expect = counterexample]
-+quickcheck[tester = prolog, iterations=1]
- oops
- 
- definition "filter_a = filter (\<lambda>x. x = a)"
-@@ -70,7 +70,7 @@
- 
- theorem S\<^sub>1_sound:
- "S\<^sub>1p w \<Longrightarrow> length [x \<leftarrow> w. x = a] = length [x \<leftarrow> w. x = b]"
--quickcheck[tester = prolog, iterations=1, expect = counterexample]
-+quickcheck[tester = prolog, iterations=1]
- oops
- 
- 
-@@ -94,7 +94,7 @@
- 
- theorem S\<^sub>2_sound:
-   "S\<^sub>2p w \<longrightarrow> length [x \<leftarrow> w. x = a] = length [x \<leftarrow> w. x = b]"
--quickcheck[tester = prolog, iterations=1, expect = counterexample]
-+quickcheck[tester = prolog, iterations=1]
- oops
- 
- inductive_set S\<^sub>3 and A\<^sub>3 and B\<^sub>3 where
-@@ -171,4 +171,4 @@
- hide_const a b
- 
- 
--end
-\ No newline at end of file
-+end
---- Isabelle2013-2-orig/src/HOL/Predicate_Compile_Examples/Lambda_Example.thy	2013-12-06 02:18:50.000000000 +1100
-+++ Isabelle2013-2/src/HOL/Predicate_Compile_Examples/Lambda_Example.thy	2014-02-09 22:21:20.677081168 +1100
-@@ -95,7 +95,7 @@
- 
- lemma
-   "\<Gamma> \<turnstile> t : U \<Longrightarrow> t \<rightarrow>\<^sub>\<beta> t' \<Longrightarrow> \<Gamma> \<turnstile> t' : U"
--quickcheck[tester = prolog, iterations = 1, expect = counterexample]
-+quickcheck[tester = prolog, iterations = 1]
- oops
- 
- text {* Verifying that the found counterexample really is one by means of a proof *}
---- Isabelle2013-2-orig/src/HOL/Predicate_Compile_Examples/List_Examples.thy	2013-12-06 02:18:50.000000000 +1100
-+++ Isabelle2013-2/src/HOL/Predicate_Compile_Examples/List_Examples.thy	2014-02-09 22:21:20.678081196 +1100
-@@ -24,7 +24,7 @@
- lemma "(xs :: nat list) = ys @ ys --> rev xs = xs"
- quickcheck[tester = random, iterations = 10000]
- quickcheck[tester = smart_exhaustive, iterations = 1, expect = counterexample]
--quickcheck[tester = prolog, expect = counterexample]
-+quickcheck[tester = prolog]
- oops
- 
- end
-\ No newline at end of file
diff --git a/sci-mathematics/isabelle/files/isabelle-2015-classpath.patch b/sci-mathematics/isabelle/files/isabelle-2015-classpath.patch
deleted file mode 100644
index 3783e46cb707..000000000000
--- a/sci-mathematics/isabelle/files/isabelle-2015-classpath.patch
+++ /dev/null
@@ -1,26 +0,0 @@
---- Isabelle2015-orig/lib/Tools/java	2015-05-25 20:06:24.000000000 +1000
-+++ Isabelle2015/lib/Tools/java	2015-07-07 16:00:19.283326554 +1000
-@@ -10,5 +10,5 @@
- unset CLASSPATH
- 
- isabelle_java java "${JAVA_ARGS[@]}" \
--  -classpath "$(jvmpath "$ISABELLE_CLASSPATH")" "$@"
-+  -classpath "$(jvmpath "$ISABELLE_CLASSPATH:$(java-config -p scala-2.11)")" "$@"
- 
---- Isabelle2015-orig/lib/Tools/scala	2015-05-25 20:06:24.000000000 +1000
-+++ Isabelle2015/lib/Tools/scala	2015-07-07 16:00:45.926327297 +1000
-@@ -14,4 +14,4 @@
- done
- 
- isabelle_scala scala "${SCALA_ARGS[@]}" \
--  -classpath "$(jvmpath "$ISABELLE_CLASSPATH")" "$@"
-+  -classpath "$(jvmpath "$ISABELLE_CLASSPATH:$(java-config -p scala-2.11)")" "$@"
---- Isabelle2015-orig/lib/Tools/scalac	2015-05-25 20:06:24.000000000 +1000
-+++ Isabelle2015/lib/Tools/scalac	2015-07-07 15:59:33.906325289 +1000
-@@ -7,5 +7,5 @@
- isabelle_admin_build jars || exit $?
- 
- isabelle_scala scalac -Dfile.encoding=UTF-8 \
--  -classpath "$(jvmpath "$ISABELLE_CLASSPATH")" "$@"
-+  -classpath "$(jvmpath "$ISABELLE_CLASSPATH:$(java-config -p scala-2.11)")" "$@"
- 
diff --git a/sci-mathematics/isabelle/files/isabelle-2015-jfreechart-classpath.patch b/sci-mathematics/isabelle/files/isabelle-2015-jfreechart-classpath.patch
deleted file mode 100644
index 9594d28c86a2..000000000000
--- a/sci-mathematics/isabelle/files/isabelle-2015-jfreechart-classpath.patch
+++ /dev/null
@@ -1,16 +0,0 @@
---- Isabelle2015-orig/contrib/jfreechart-1.0.14-1/etc/settings	2013-09-12 07:46:57.000000000 +1000
-+++ Isabelle2015/contrib/jfreechart-1.0.14-1/etc/settings	2015-07-07 17:22:55.716464804 +1000
-@@ -1,9 +1,8 @@
- # -*- shell-script -*- :mode=shellscript:
- 
- JFREECHART_HOME="$COMPONENT"
--JFREECHART_JAR_NAMES="iText-2.1.5.jar jcommon-1.0.18.jar jfreechart-1.0.14.jar"
--
--classpath "$JFREECHART_HOME/lib/iText-2.1.5.jar"
--classpath "$JFREECHART_HOME/lib/jcommon-1.0.18.jar"
--classpath "$JFREECHART_HOME/lib/jfreechart-1.0.14.jar"
-+JFREECHART_JAR_NAMES="$(java-config --classpath itext | sed -e 's@:@ @g' -e 's@/[^ ]*/@@g') $(java-config --classpath jcommon-1.0 | sed -e 's@:@ @g' -e 's@/[^ ]*/@@g') $(java-config --classpath jfreechart-1.0 | sed -e 's@:@ @g' -e 's@/[^ ]*/@@g')"
- 
-+classpath "$(java-config --classpath itext)"
-+classpath "$(java-config --classpath jcommon-1.0)"
-+classpath "$(java-config --classpath jfreechart-1.0)"
diff --git a/sci-mathematics/isabelle/isabelle-2015.ebuild b/sci-mathematics/isabelle/isabelle-2015.ebuild
deleted file mode 100644
index 2d0f9d9b10a8..000000000000
--- a/sci-mathematics/isabelle/isabelle-2015.ebuild
+++ /dev/null
@@ -1,301 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="5"
-
-inherit eutils check-reqs java-pkg-2 multilib versionator
-
-MY_PN="Isabelle"
-MY_PV=$(replace_all_version_separators '-')
-MY_P="${MY_PN}${MY_PV}"
-
-# csdp is used in the compile of HOL_ex in
-# Library/Sum_of_Squares/sos_wrapper.ML where it execs $ISABELLE_CSDP
-CSDP_PV="6.x"
-CSDP_PN="csdp"
-CSDP_P="${CSDP_PN}-${CSDP_PV}"
-CSDP_IC_PN="${CSDP_PN}-isabelle-component"
-CSDP_IC_P="${CSDP_IC_PN}-${CSDP_PV}"
-
-# exec_process is used in the compile of HOL-Mirabelle-ex, Codegen, etc.
-EXEC_PROCESS_PV="1.0.3"
-EXEC_PROCESS_PN="exec_process"
-EXEC_PROCESS_P="${EXEC_PROCESS_PN}-${EXEC_PROCESS_PV}"
-EXEC_PROCESS_IC_PN="${EXEC_PROCESS_PN}-isabelle-component"
-EXEC_PROCESS_IC_P="${EXEC_PROCESS_IC_PN}-${EXEC_PROCESS_PV}"
-
-JEDIT_PV="20150228"
-JEDIT_PN="jedit_build"
-JEDIT_P="${JEDIT_PN}-${JEDIT_PV}"
-JEDIT_IC_PN="${JEDIT_PN}-isabelle-component"
-JEDIT_IC_P="${JEDIT_IC_PN}-${JEDIT_PV}"
-
-JFREECHART_PV="1.0.14-1"
-JFREECHART_PN="jfreechart"
-JFREECHART_P="${JFREECHART_PN}-${JFREECHART_PV}"
-JFREECHART_IC_PN="${JFREECHART_PN}-isabelle-component"
-JFREECHART_IC_P="${JFREECHART_IC_PN}-${JFREECHART_PV}"
-
-POLYML_PV="5.5.2-3"
-POLYML_PN="polyml"
-POLYML_P="${POLYML_PN}-${POLYML_PV}"
-POLYML_IC_PN="${POLYML_PN}-isabelle-component"
-POLYML_IC_P="${POLYML_IC_PN}-${POLYML_PV}"
-
-XZ_JAVA_PV="1.5"
-XZ_JAVA_PN="xz-java"
-XZ_JAVA_P="${XZ_JAVA_PN}-${XZ_JAVA_PV}"
-XZ_JAVA_IC_PN="${XZ_JAVA_PN}-isabelle-component"
-XZ_JAVA_IC_P="${XZ_JAVA_IC_PN}-${XZ_JAVA_PV}"
-
-SS="2.11"
-
-DESCRIPTION="Isabelle is a generic proof assistant"
-HOMEPAGE="http://www.cl.cam.ac.uk/research/hvg/Isabelle/index.html"
-SRC_URI="http://isabelle.in.tum.de/dist/${MY_P}.tar.gz
-		http://dev.gentoo.org/~gienah/snapshots/${CSDP_IC_P}.tar.gz
-		http://dev.gentoo.org/~gienah/snapshots/${EXEC_PROCESS_IC_P}.tar.gz
-		http://isabelle.in.tum.de/components/${JEDIT_P}.tar.gz -> ${JEDIT_IC_P}.tar.gz
-		http://isabelle.in.tum.de/dist/contrib/${JFREECHART_P}.tar.gz -> ${JFREECHART_IC_P}.tar.gz
-		http://dev.gentoo.org/~gienah/snapshots/${POLYML_IC_P}.tar.gz
-		http://dev.gentoo.org/~gienah/snapshots/${XZ_JAVA_IC_P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0/${PV}"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc graphbrowsing ledit readline proofgeneral"
-
-#upstream says
-#bash 2.x/3.x, Poly/ML 5.x, Perl 5.x,
-#for document preparation: complete LaTeX
-DEPEND=">=app-shells/bash-3.0:*
-	>=dev-java/jcommon-1.0.18:1.0
-	>=dev-java/jfreechart-1.0.14:1.0
-	>=dev-java/itext-2.1.5:0
-	dev-java/xz-java:0
-	>=dev-lang/ghc-7.6.3
-	>=dev-lang/polyml-5.5.2:=[-portable]
-	>=dev-lang/perl-5.8.8-r2
-	dev-lang/swi-prolog
-	sci-libs/coinor-csdp
-	=virtual/jdk-1.7*
-	doc? (
-		virtual/latex-base
-		dev-tex/rail
-	)
-	>=dev-lang/scala-2.11.6:${SS}
-	ledit? (
-		app-misc/ledit
-	)
-	readline? (
-		app-misc/rlwrap
-	)"
-
-RDEPEND="dev-perl/libwww-perl
-	sci-mathematics/sha1-polyml
-	>=virtual/jre-1.7
-	proofgeneral? (
-		>=app-emacs/proofgeneral-4.1
-	)
-	${DEPEND}"
-
-S="${WORKDIR}"/Isabelle${MY_PV}
-CSDP_S="${WORKDIR}/${CSDP_P}"
-EXEC_PROCESS_S="${WORKDIR}/${EXEC_PROCESS_P}"
-JEDIT_S="${WORKDIR}/${JEDIT_P}"
-JFREECHART_S="${WORKDIR}/${JFREECHART_P}"
-XZ_JAVA_S="${WORKDIR}/${XZ_JAVA_P}"
-TARGETDIR="/usr/share/Isabelle"${MY_PV}
-LIBDIR="/usr/"$(get_libdir)"/Isabelle"${MY_PV}
-
-# Notes on QA warnings: * Class files not found via DEPEND in package.env
-# Stuff with $ in the name appear to be spurious:
-# isabelle/Markup_Tree$$anonfun$results$1$1.class
-# scala/tools/nsc/backend/jvm/GenJVM$BytecodeGenerator$$anonfun$computeLocalVarsIndex$1.class
-# It wants javafx, I am unsure how to fix this. I test isabelle with the Sun JDK:
-# javafx/application/Platform.class               javafx
-# Presumably the user can provide the jEdit plugins if they are necessary:
-# marker/MarkerSetsPlugin.class                   http://plugins.jedit.org/plugins/?MarkerSets
-# projectviewer/gui/OptionPaneBase.class          http://plugins.jedit.org/plugins/?ProjectViewer
-
-LIBRARY_PKGS="itext,jcommon-1.0,jfreechart-1.0,scala-${SS},xz-java"
-
-CHECKREQS_MEMORY="8192M"
-CHECKREQS_DISK_BUILD="35G"
-CHECKREQS_DISK_USR="17G"
-
-src_unpack() {
-	unpack "${MY_P}.tar.gz"
-	cd "${S}/contrib" || die
-	unpack ${CSDP_IC_P}.tar.gz
-	unpack ${EXEC_PROCESS_IC_P}.tar.gz
-	unpack ${JEDIT_IC_P}.tar.gz
-	unpack ${JFREECHART_IC_P}.tar.gz
-	unpack ${POLYML_IC_P}.tar.gz
-	unpack ${XZ_JAVA_IC_P}.tar.gz
-}
-
-pkg_setup() {
-	java-pkg-2_pkg_setup
-	check-reqs_pkg_setup
-}
-
-src_prepare() {
-	java-pkg-2_src_prepare
-	java-pkg_getjars ${LIBRARY_PKGS}
-	epatch "${FILESDIR}/${PN}-2013-gentoo-settings.patch"
-	epatch "${FILESDIR}/${PN}-2015-classpath.patch"
-	epatch "${FILESDIR}/${PN}-2015-jfreechart-classpath.patch"
-	polymlver=$(poly -v | cut -d' ' -f2)
-	polymlarch=$(poly -v | cut -d' ' -f9 | cut -d'-' -f1)
-	sed -e "s@5.5.0@${polymlver}@g" \
-		-i "${S}/etc/settings" \
-		|| die "Could not configure polyml version in etc/settings"
-	sed -e "s@ML_HOME=\"/@ML_HOME=\"${ROOT}@" \
-		-i "${S}/etc/settings" \
-		|| die "Could not configure polyml ML_HOME in etc/settings"
-	sed -e "s@x86_64@${polymlarch}@g" \
-		-i "${S}/etc/settings" \
-		|| die "Could not configure polyml arch in etc/settings"
-	sed -e "s@PROOFGENERAL_HOME=\"/@PROOFGENERAL_HOME=\"${ROOT}@" \
-		-i "${S}/etc/settings" \
-		|| die "Could not configure PROOFGENERAL_HOME in etc/settings"
-	sed -e "s@/usr/lib64/Isabelle${MY_PV}@${LIBDIR}@g" \
-		-i "${S}/etc/settings" \
-		|| die "Could not configure Isabelle lib directory in etc/settings"
-	epatch "${FILESDIR}/${PN}-2012-graphbrowser.patch"
-	epatch "${FILESDIR}/${PN}-2012-libsha1.patch"
-	# this example fails to compile with swi-prolog 6.5.2, so patch it so that
-	# Isabelle will build, then reverse the patch so that the user can see the
-	# original code.
-	epatch "${FILESDIR}/${PN}-2013.2-HOL-Predicate_Compile_Examples.patch"
-	cat <<- EOF >> "${S}/etc/settings"
-
-		ISABELLE_GHC="${ROOT}usr/bin/ghc"
-		ISABELLE_OCAML="${ROOT}usr/bin/ocaml"
-		ISABELLE_SWIPL="${ROOT}usr/bin/swipl"
-		ISABELLE_JDK_HOME="\$(java-config --jdk-home)"
-		SCALA_HOME="${ROOT}usr/share/scala-${SS}"
-		SHA1_HOME="/usr/$(get_libdir)/sha1-polyml"
-	EOF
-	cat <<- EOF >> "${S}/etc/components"
-		#bundled components
-		contrib/${CSDP_P}
-		contrib/${EXEC_PROCESS_P}
-		contrib/${JEDIT_P}
-		contrib/${JFREECHART_P}
-		contrib/${POLYML_P}
-		contrib/${XZ_JAVA_P}
-	EOF
-	if use ledit && ! use readline; then
-		epatch "${FILESDIR}/${PN}-2012-reverse-line-editor-order.patch"
-	fi
-	rm -f "${S}/contrib/jfreechart-1.0.14-1/lib/jcommon-1.0.18.jar" \
-		"${S}/contrib/jfreechart-1.0.14-1/lib/jfreechart-1.0.14.jar" \
-		"${S}/contrib/jfreechart-1.0.14-1/lib/iText-2.1.5.jar" \
-		|| die "Could not rm bundled jar files supplied by Gentoo"
-}
-
-src_compile() {
-	einfo "Building Isabelle. This may take some time."
-	pushd contrib/${EXEC_PROCESS_P} || die "Could not cd to contrib/${EXEC_PROCESS_P}"
-	$(tc-getCC) ${CFLAGS} ${LDFLAGS} -o ${EXEC_PROCESS_PN} ${EXEC_PROCESS_PN}.c \
-		|| die "Could not build ${EXEC_PROCESS_PN}"
-	popd
-	if use graphbrowsing
-	then
-		rm -f "${S}/lib/browser/GraphBrowser.jar" \
-			|| die "failed cleaning graph browser directory"
-		pushd "${S}/lib/browser" \
-			|| die "Could not change directory to lib/browser"
-		./build || die "failed building the graph browser"
-		popd
-	fi
-	./bin/isabelle jedit -b -f || die "pide build failed"
-	pushd "${S}"/src/Pure || die "Could not change directory to src/Pure"
-	../../bin/isabelle env ./build-jars -f || die "build-jars failed"
-	popd
-	./bin/isabelle build -a -b -s -v || die "isabelle build failed"
-	epatch --reverse "${FILESDIR}/${PN}-2013.2-HOL-Predicate_Compile_Examples.patch"
-}
-
-src_install() {
-	insinto ${TARGETDIR}
-	doins -r src
-	doins -r lib
-	doins -r contrib
-	doins ROOTS
-
-	docompress -x /usr/share/doc/${PF}
-	dodoc -r doc
-	if use doc; then
-		dosym /usr/share/doc/${PF}/doc "${TARGETDIR}/doc"
-		# The build of sci-mathematics/haskabelle with use doc requires
-		# sci-mathematics/isabelle[doc?]. The haskabelle doc build requires
-		# the src/Doc directory stuff in the isabelle package.
-		doins -r src/Doc
-		for i in $(find ./src/Doc -type f -executable -print)
-		do
-			exeinto $(dirname "${TARGETDIR}/${i}")
-			doexe ${i}
-		done
-	fi
-
-	for i in $(find ./{bin,lib,src/HOL,src/Pure,src/Tools} -type f -executable -print)
-	do
-		exeinto $(dirname "${TARGETDIR}/${i}")
-		doexe ${i}
-	done
-
-	insinto /etc/isabelle
-	doins -r etc/*
-	dosym /etc/isabelle "${TARGETDIR}/etc"
-
-	dosym "${LIBDIR}/heaps" "${TARGETDIR}/heaps"
-	insinto ${LIBDIR}
-	doins -r heaps
-
-	./bin/isabelle install -d ${TARGETDIR} "${ED}usr/bin" \
-		|| die "isabelle install failed"
-	newicon lib/icons/"${PN}.xpm" "${PN}.xpm"
-	newicon lib/icons/"${PN}-mini.xpm" "${PN}-mini.xpm"
-	dodoc ANNOUNCE CONTRIBUTORS COPYRIGHT NEWS README
-
-	java-pkg_regjar \
-		$(find . -type f -name \*.jar -print | sed -e "s@^\.@${ED}${TARGETDIR}@g")
-}
-
-pkg_postinst() {
-	# If any of the directories in /etc/isabelle/components do not exist, then
-	# even isabelle getenv ISABELLE_HOME fails.  Hence it is necessary to
-	# to delete any non-existing directories.  If an old Isabelle version was
-	# installed with component ebuilds like sci-mathematics/e, then the
-	# Isabelle version is upgraded, then the contrib directories will not
-	# exist initially, it is necessary to delete them from /etc/isabelle/components.
-	# Then these components are rebuilt (creating these directories) using the
-	# EAPI=5 subslot depends.
-	for i in $(egrep '^[^#].*$' "${ROOT}etc/isabelle/components")
-	do
-		if [ ! -d /usr/share/${MY_P}/${i} ]; then
-			sed -e "\@${i}@d" -i "${ROOT}etc/isabelle/components"
-		fi
-	done
-	if use ledit && use readline; then
-		elog "Both readline and ledit use flags specified.  The default setting"
-		elog "if both are installed is to use readline (rlwrap), this can be"
-		elog "modfied by editing the ISABELLE_LINE_EDITOR setting in"
-		elog "${ROOT}/etc/isabelle/settings"
-	fi
-	elog "Please ensure you have a pdf viewer installed, for example:"
-	elog "As root: emerge app-text/zathura-pdf-poppler"
-	elog "Please configure your preferred pdf viewer, something like:"
-	elog "As normal user: xdg-mime default zathura.desktop application/pdf"
-	elog "Or alternatively by editing the PDF_VIEWER variable in the system"
-	elog "settings file ${ROOT}etc/isabelle/settings and/or the user"
-	elog "settings file \$HOME/.isabelle/${MY_P}/etc/settings"
-	elog "To improve sledgehammer performance, consider installing:"
-	elog "USE=isabelle emerge sci-mathematics/e sci-mathematics/spass"
-	elog "For nitpick it is necessary to install:"
-	elog "emerge sci-mathematics/kodkodi"
-}
diff --git a/sci-mathematics/isabelle/metadata.xml b/sci-mathematics/isabelle/metadata.xml
index a23d48b1035d..d59b385fb4ad 100644
--- a/sci-mathematics/isabelle/metadata.xml
+++ b/sci-mathematics/isabelle/metadata.xml
@@ -25,7 +25,5 @@ properties of computer languages and protocols.
   <flag name="ledit">Use ledit for the isabelle tty line editor</flag> 
   <flag name="readline">Use readline (rlwrap) for the isabelle tty line
   editor</flag> 
-  <flag name="proofgeneral">Add support for the
-  <pkg>app-emacs/proofgeneral</pkg> proof assistant front end.</flag>
 </use>
 </pkgmetadata>