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* sci-biology/profphd: Updated depsJustin Lecher2013-04-243-10/+17
| | | | | Package-Manager: portage-2.2.0_alpha173/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* restricted strip as technically that modifies the binaries, and we want to ↵Ian Stakenvicius2013-04-203-8/+15
| | | | | | | be as safe as possible wrt to the EULA Package-Manager: portage-2.1.11.55/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* minor fixes to conf.d and init.d filesIan Stakenvicius2013-04-165-8/+27
| | | | | Package-Manager: portage-2.1.11.55/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* fixing the commit that partially failedIan Stakenvicius2013-04-164-28/+50
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* version bump, remove old; updated license and added RESTRICT as per license ↵Ian Stakenvicius2013-04-168-183/+95
| | | | | | | requirements, also added 32bit variant Package-Manager: portage-2.1.11.55/cvs/Linux x86_64 Manifest-Sign-Key: 0x2B6559ED
* sci-biology/stride: Fix license, thanks ulm looking for correct licensingJustin Lecher2013-04-145-25/+29
| | | | | Package-Manager: portage-2.2.0_alpha171/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* Fix LICENSE, see README and notices in source files.Ulrich Müller2013-04-114-22/+32
| | | | | Package-Manager: portage-2.1.11.60/cvs/Linux x86_64 Manifest-Sign-Key: 0x9433907D693FB5B8!
* sci-biology/samtools: Install bcftools and vcfutils.pl pointed out by mahnmutJustin Lecher2013-03-293-6/+68
| | | | | Package-Manager: portage-2.2.0_alpha169/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/seqan: Correct doc installation pathJustin Lecher2013-03-293-9/+15
| | | | | Package-Manager: portage-2.2.0_alpha170/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/profphd: Add some more PREFIX loveJustin Lecher2013-03-213-7/+24
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/profphd: New additionJustin Lecher2013-03-193-2/+34
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/profphd: New additionJustin Lecher2013-03-192-0/+14
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/amos: Change USE name from qt to qt4, #462218Justin Lecher2013-03-194-14/+14
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* sci-biology/meme: Fix renaming procedure, #460372Justin Lecher2013-03-193-9/+12
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
* Add proxy-maintainers to metadata.xmlMarkos Chandras2013-03-173-7/+22
| | | | | Package-Manager: portage-2.1.11.55/cvs/Linux x86_64 Manifest-Sign-Key: 0xC2BA7F3C!
* Add proxy-maintainers to metadata.xmlMarkos Chandras2013-03-173-7/+22
| | | | | Package-Manager: portage-2.1.11.55/cvs/Linux x86_64 Manifest-Sign-Key: 0xC2BA7F3C!
* sci-biology/tophat: Version Bump; unbundle sci-biology/seqanJustin Lecher2013-03-134-5/+159
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/seqan: New additionJustin Lecher2013-03-133-2/+56
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/seqan: New additionJustin Lecher2013-03-132-0/+14
| | | | | Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/yass: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-123-22/+21
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/wgs-assembler: Drop Andrey as maintainer so that bugs get ↵Justin Lecher2013-03-123-12/+11
| | | | | | | assigned to sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/velvet: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-123-18/+17
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/vcftools: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-123-10/+9
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/vaal: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-123-10/+9
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/unafold: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-123-10/+9
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/ucsc-genome-browser: Drop Andrey as maintainer so that bugs get ↵Justin Lecher2013-03-123-21/+20
| | | | | | | assigned to sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/trf: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-123-10/+9
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/tophat: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-123-16/+14
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/t-coffee: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-123-7/+16
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/snpfile: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-123-20/+19
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/shrimp: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-11/+10
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/seaview: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-10/+19
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/samtools: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-11/+10
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/rmblast: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-10/+9
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/repeatmasker-libraries: Drop Andrey as maintainer so that bugs ↵Justin Lecher2013-03-113-10/+9
| | | | | | | get assigned to sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/repeatmasker: Drop Andrey as maintainer so that bugs get ↵Justin Lecher2013-03-113-10/+9
| | | | | | | assigned to sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/recon: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-13/+11
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/raxml: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-10/+9
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/pysam: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-19/+18
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/prank: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-22/+20
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/plink: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-10/+9
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/pilercr: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-16/+15
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/picard: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-16/+15
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/phylip: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-11/+10
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/phred: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-16/+15
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/phrap: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-11/+10
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/pals: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-16/+15
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/njplot: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-113-17/+16
| | | | | | | sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/newick-utils: Drop Andrey as maintainer so that bugs get ↵Justin Lecher2013-03-113-20/+17
| | | | | | | assigned to sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
* sci-biology/ncbi-tools++: Drop Andrey as maintainer so that bugs get ↵Justin Lecher2013-03-113-10/+9
| | | | | | | assigned to sci-biology directly Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916