diff options
Diffstat (limited to 'sci-visualization')
8 files changed, 970 insertions, 6 deletions
diff --git a/sci-visualization/paraview/ChangeLog b/sci-visualization/paraview/ChangeLog index 6feba211d16e..dd81cf8bb87e 100644 --- a/sci-visualization/paraview/ChangeLog +++ b/sci-visualization/paraview/ChangeLog @@ -1,6 +1,16 @@ # ChangeLog for sci-visualization/paraview # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-visualization/paraview/ChangeLog,v 1.69 2013/05/29 16:37:35 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-visualization/paraview/ChangeLog,v 1.70 2013/07/01 23:33:28 hasufell Exp $ + +*paraview-4.0.1 (01 Jul 2013) + + 01 Jul 2013; Julian Ospald <hasufell@gentoo.org> +paraview-4.0.1.ebuild, + +files/paraview-4.0.1-gcc-4.7.patch, + +files/paraview-4.0.1-removesqlite.patch, + +files/paraview-4.0.1-vtk-cg-path.patch, + +files/paraview-4.0.1-vtknetcd.patch, + +files/paraview-4.0.1-xdmf-cstring.patch: + version bump 29 May 2013; Justin Lecher <jlec@gentoo.org> paraview-3.98.0.ebuild, paraview-3.98.0-r1.ebuild, metadata.xml: diff --git a/sci-visualization/paraview/Manifest b/sci-visualization/paraview/Manifest index 5705aaa2732d..d44f6b07f25f 100644 --- a/sci-visualization/paraview/Manifest +++ b/sci-visualization/paraview/Manifest @@ -1,5 +1,5 @@ -----BEGIN PGP SIGNED MESSAGE----- -Hash: SHA512 +Hash: SHA256 AUX paraview-3.98.0-gcc-4.7.patch 759 SHA256 5f3b7b2cd25fb09004b5820ffb554a5fec21100f8048db257a67708d8abf04e0 SHA512 85164dc2931d960114d23b697022b2e1939513ccb32a0c5af588d980f919a112653b170f076265bea692f6aae0d2efd89ed08597cf13dbfc5c3b8a2292980e02 WHIRLPOOL e4fd9d14ae2065be600f6ed3b00ced9bb1273f5a32fc4eb46d6ccf160d4003abb805a81d06080339c1dba255ac9d702e0c94d8596c6fc1de07d35161b62cc1a9 AUX paraview-3.98.0-mpi4py.patch 395 SHA256 070e1d79e2a22f971950d8f08f4bfab28cb07b450060f8dd2c4bfc28f4d6fd96 SHA512 2bd09384bc88c5182466465c2b513ec0461d792b36b7d0be608693c557c3fc2a2b7d401c1453c14149748343ac9f7f5d57c26c92f6e7eff240efcc50811e4ed9 WHIRLPOOL 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using namespace ftgl; + #endif + ++#include <stdint.h> ++ + // Print debug info + #define VTK_FTFC_DEBUG 0 + #define VTK_FTFC_DEBUG_CD 0 +--- a/VTK/Rendering/FreeType/vtkFreeTypeUtilities.cxx ++++ b/VTK/Rendering/FreeType/vtkFreeTypeUtilities.cxx +@@ -36,6 +36,8 @@ + using namespace ftgl; + #endif + ++#include <stdint.h> ++ + // Print debug info + + #define VTK_FTFC_DEBUG 0 diff --git a/sci-visualization/paraview/files/paraview-4.0.1-removesqlite.patch b/sci-visualization/paraview/files/paraview-4.0.1-removesqlite.patch new file mode 100644 index 000000000000..be495b4fbb3a --- /dev/null +++ b/sci-visualization/paraview/files/paraview-4.0.1-removesqlite.patch @@ -0,0 +1,517 @@ +Description: Import patch from VTK to remove sqlite +Author: Mathieu Malaterre <mathieu.malaterre@gmail.com> +Last-Update: Mon Feb 11 14:58:03 UTC 2013 + +remove the internal copy of sqlite (vtksqlite) +http://patch-tracker.debian.org/patch/series/view/paraview/3.14.1-7/removesqlite.patch + +--- VTK/IO/SQL/vtkSQLiteDatabase.cxx ++++ VTK/IO/SQL/vtkSQLiteDatabase.cxx +@@ -29,7 +29,7 @@ + #include <vtksys/ios/fstream> + #include <vtksys/ios/sstream> + +-#include <vtksqlite/vtk_sqlite3.h> ++#include <sqlite3.h> + + vtkStandardNewMacro(vtkSQLiteDatabase); + +@@ -307,15 +307,15 @@ + } + } + +- int result = vtk_sqlite3_open(this->DatabaseFileName, & (this->SQLiteInstance)); ++ int result = sqlite3_open(this->DatabaseFileName, & (this->SQLiteInstance)); + +- if (result != VTK_SQLITE_OK) ++ if (result != SQLITE_OK) + { + vtkDebugMacro(<<"SQLite open() failed. Error code is " + << result << " and message is " +- << vtk_sqlite3_errmsg(this->SQLiteInstance) ); ++ << sqlite3_errmsg(this->SQLiteInstance) ); + +- vtk_sqlite3_close(this->SQLiteInstance); ++ sqlite3_close(this->SQLiteInstance); + return false; + } + else +@@ -334,8 +334,8 @@ + } + else + { +- int result = vtk_sqlite3_close(this->SQLiteInstance); +- if (result != VTK_SQLITE_OK) ++ int result = sqlite3_close(this->SQLiteInstance); ++ if (result != SQLITE_OK) + { + vtkWarningMacro(<< "Close(): SQLite returned result code " << result); + } +@@ -374,7 +374,7 @@ + if (!status) + { + vtkErrorMacro(<< "GetTables(): Database returned error: " +- << vtk_sqlite3_errmsg(this->SQLiteInstance) ); ++ << sqlite3_errmsg(this->SQLiteInstance) ); + query->Delete(); + return this->Tables; + } +@@ -403,7 +403,7 @@ + if (!status) + { + vtkErrorMacro(<< "GetRecord(" << table << "): Database returned error: " +- << vtk_sqlite3_errmsg(this->SQLiteInstance) ); ++ << sqlite3_errmsg(this->SQLiteInstance) ); + query->Delete(); + return NULL; + } +@@ -467,10 +467,10 @@ + // ---------------------------------------------------------------------- + bool vtkSQLiteDatabase::HasError() + { +- return (vtk_sqlite3_errcode(this->SQLiteInstance)!=VTK_SQLITE_OK); ++ return (sqlite3_errcode(this->SQLiteInstance)!=SQLITE_OK); + } + + const char* vtkSQLiteDatabase::GetLastErrorText() + { +- return vtk_sqlite3_errmsg(this->SQLiteInstance); ++ return sqlite3_errmsg(this->SQLiteInstance); + } +--- VTK/IO/SQL/vtkSQLiteQuery.cxx ++++ VTK/IO/SQL/vtkSQLiteQuery.cxx +@@ -25,7 +25,7 @@ + #include "vtkVariant.h" + #include "vtkVariantArray.h" + +-#include <vtksqlite/vtk_sqlite3.h> ++#include <sqlite3.h> + + #include <assert.h> + +@@ -43,7 +43,7 @@ + { + this->Statement = NULL; + this->InitialFetch = true; +- this->InitialFetchResult=VTK_SQLITE_DONE; ++ this->InitialFetchResult=SQLITE_DONE; + this->LastErrorText = NULL; + this->TransactionInProgress = false; + } +@@ -61,7 +61,7 @@ + { + if (this->Database != NULL) + { +- vtk_sqlite3_finalize(this->Statement); ++ sqlite3_finalize(this->Statement); + this->Statement = NULL; + } + } +@@ -131,8 +131,8 @@ + if (this->Statement) + { + vtkDebugMacro(<<"Finalizing old statement"); +- int finalizeStatus = vtk_sqlite3_finalize(this->Statement); +- if (finalizeStatus != VTK_SQLITE_OK) ++ int finalizeStatus = sqlite3_finalize(this->Statement); ++ if (finalizeStatus != SQLITE_OK) + { + vtkWarningMacro(<<"SetQuery(): Finalize returned unexpected code " + << finalizeStatus); +@@ -151,19 +151,19 @@ + return false; + } + +- vtk_sqlite3 *db = dbContainer->SQLiteInstance; ++ sqlite3 *db = dbContainer->SQLiteInstance; + const char *unused_statement; + +- int prepareStatus = vtk_sqlite3_prepare_v2(db, ++ int prepareStatus = sqlite3_prepare_v2(db, + this->Query, + static_cast<int>(strlen(this->Query)), + &this->Statement, + &unused_statement); + +- if (prepareStatus != VTK_SQLITE_OK) ++ if (prepareStatus != SQLITE_OK) + { +- this->SetLastErrorText(vtk_sqlite3_errmsg(db)); +- vtkWarningMacro(<<"SetQuery(): vtk_sqlite3_prepare_v2() failed with error message " ++ this->SetLastErrorText(sqlite3_errmsg(db)); ++ vtkWarningMacro(<<"SetQuery(): sqlite3_prepare_v2() failed with error message " + << this->GetLastErrorText() + << " on statement: '" + << this->Query << "'"); +@@ -194,31 +194,31 @@ + } + else + { +- vtk_sqlite3_reset(this->Statement); ++ sqlite3_reset(this->Statement); + } + + vtkDebugMacro(<<"Execute(): Query ready to execute."); + + this->InitialFetch = true; +- int result = vtk_sqlite3_step(this->Statement); ++ int result = sqlite3_step(this->Statement); + this->InitialFetchResult = result; + +- if (result == VTK_SQLITE_DONE) ++ if (result == SQLITE_DONE) + { + this->SetLastErrorText(NULL); + this->Active = true; + return true; + } +- else if (result != VTK_SQLITE_ROW) ++ else if (result != SQLITE_ROW) + { + vtkSQLiteDatabase *dbContainer = + vtkSQLiteDatabase::SafeDownCast(this->Database); + assert(dbContainer != NULL); + +- vtk_sqlite3 *db = dbContainer->SQLiteInstance; ++ sqlite3 *db = dbContainer->SQLiteInstance; + +- this->SetLastErrorText(vtk_sqlite3_errmsg(db)); +- vtkDebugMacro(<< "Execute(): vtk_sqlite3_step() returned error message " ++ this->SetLastErrorText(sqlite3_errmsg(db)); ++ vtkDebugMacro(<< "Execute(): sqlite3_step() returned error message " + << this->GetLastErrorText()); + this->Active = false; + return false; +@@ -239,7 +239,7 @@ + } + else + { +- return vtk_sqlite3_column_count(this->Statement); ++ return sqlite3_column_count(this->Statement); + } + } + +@@ -259,7 +259,7 @@ + } + else + { +- return vtk_sqlite3_column_name(this->Statement, column); ++ return sqlite3_column_name(this->Statement, column); + } + } + +@@ -279,22 +279,22 @@ + } + else + { +- switch (vtk_sqlite3_column_type(this->Statement, column)) ++ switch (sqlite3_column_type(this->Statement, column)) + { +- case VTK_SQLITE_INTEGER: ++ case SQLITE_INTEGER: + return VTK_INT; +- case VTK_SQLITE_FLOAT: ++ case SQLITE_FLOAT: + return VTK_FLOAT; +- case VTK_SQLITE_TEXT: ++ case SQLITE_TEXT: + return VTK_STRING; +- case VTK_SQLITE_BLOB: ++ case SQLITE_BLOB: + return VTK_STRING; // until we have a BLOB type of our own +- case VTK_SQLITE_NULL: ++ case SQLITE_NULL: + return VTK_VOID; // ??? what makes sense here? + default: + { + vtkErrorMacro(<<"GetFieldType(): Unknown data type " +- << vtk_sqlite3_column_type(this->Statement, column) ++ << sqlite3_column_type(this->Statement, column) + <<" from SQLite."); + return VTK_VOID; + } +@@ -315,7 +315,7 @@ + { + vtkDebugMacro(<<"NextRow(): Initial fetch being handled."); + this->InitialFetch = false; +- if (this->InitialFetchResult == VTK_SQLITE_DONE) ++ if (this->InitialFetchResult == SQLITE_DONE) + { + return false; + } +@@ -326,12 +326,12 @@ + } + else + { +- int result = vtk_sqlite3_step(this->Statement); +- if (result == VTK_SQLITE_DONE) ++ int result = sqlite3_step(this->Statement); ++ if (result == SQLITE_DONE) + { + return false; + } +- else if (result == VTK_SQLITE_ROW) ++ else if (result == SQLITE_ROW) + { + return true; + } +@@ -339,8 +339,8 @@ + { + vtkSQLiteDatabase *dbContainer = vtkSQLiteDatabase::SafeDownCast( this->Database ); + assert(dbContainer != NULL); +- vtk_sqlite3 *db = dbContainer->SQLiteInstance; +- this->SetLastErrorText(vtk_sqlite3_errmsg(db)); ++ sqlite3 *db = dbContainer->SQLiteInstance; ++ this->SetLastErrorText(sqlite3_errmsg(db)); + vtkErrorMacro(<<"NextRow(): Database returned error code " + << result << " with the following message: " + << this->GetLastErrorText()); +@@ -366,33 +366,33 @@ + } + else + { +- switch (vtk_sqlite3_column_type(this->Statement, column)) ++ switch (sqlite3_column_type(this->Statement, column)) + { +- case VTK_SQLITE_INTEGER: +- return vtkVariant(vtk_sqlite3_column_int(this->Statement, column)); ++ case SQLITE_INTEGER: ++ return vtkVariant(sqlite3_column_int(this->Statement, column)); + +- case VTK_SQLITE_FLOAT: +- return vtkVariant(vtk_sqlite3_column_double(this->Statement, column)); ++ case SQLITE_FLOAT: ++ return vtkVariant(sqlite3_column_double(this->Statement, column)); + +- case VTK_SQLITE_TEXT: ++ case SQLITE_TEXT: + { + vtksys_ios::ostringstream str; +- str << vtk_sqlite3_column_text(this->Statement, column); ++ str << sqlite3_column_text(this->Statement, column); + return vtkVariant(vtkStdString(str.str())); + } + +- case VTK_SQLITE_BLOB: ++ case SQLITE_BLOB: + { + // This is a hack ... by passing the BLOB to vtkStdString with an explicit + // byte count, we ensure that the string will store all of the BLOB's bytes, + // even if there are NULL values. + + return vtkVariant(vtkStdString( +- static_cast<const char*>(vtk_sqlite3_column_blob(this->Statement, column)), +- vtk_sqlite3_column_bytes(this->Statement, column))); ++ static_cast<const char*>(sqlite3_column_blob(this->Statement, column)), ++ sqlite3_column_bytes(this->Statement, column))); + } + +- case VTK_SQLITE_NULL: ++ case SQLITE_NULL: + default: + return vtkVariant(); + } +@@ -423,11 +423,11 @@ + vtkSQLiteDatabase *dbContainer = vtkSQLiteDatabase::SafeDownCast( this->Database ); + assert(dbContainer != NULL); + +- vtk_sqlite3 *db = dbContainer->SQLiteInstance; ++ sqlite3 *db = dbContainer->SQLiteInstance; + char *errorMessage = NULL; +- int result = vtk_sqlite3_exec(db, BEGIN_TRANSACTION, NULL, NULL, &errorMessage); ++ int result = sqlite3_exec(db, BEGIN_TRANSACTION, NULL, NULL, &errorMessage); + +- if (result == VTK_SQLITE_OK) ++ if (result == SQLITE_OK) + { + this->TransactionInProgress = true; + this->SetLastErrorText(NULL); +@@ -451,7 +451,7 @@ + { + if (this->Statement) + { +- vtk_sqlite3_finalize(this->Statement); ++ sqlite3_finalize(this->Statement); + this->Statement = NULL; + } + +@@ -463,11 +463,11 @@ + + vtkSQLiteDatabase *dbContainer = vtkSQLiteDatabase::SafeDownCast( this->Database ); + assert(dbContainer != NULL); +- vtk_sqlite3 *db = dbContainer->SQLiteInstance; ++ sqlite3 *db = dbContainer->SQLiteInstance; + char *errorMessage = NULL; +- int result = vtk_sqlite3_exec(db, COMMIT_TRANSACTION, NULL, NULL, &errorMessage); ++ int result = sqlite3_exec(db, COMMIT_TRANSACTION, NULL, NULL, &errorMessage); + +- if (result == VTK_SQLITE_OK) ++ if (result == SQLITE_OK) + { + this->TransactionInProgress = false; + this->SetLastErrorText(NULL); +@@ -499,11 +499,11 @@ + + vtkSQLiteDatabase *dbContainer = vtkSQLiteDatabase::SafeDownCast( this->Database ); + assert(dbContainer != NULL); +- vtk_sqlite3 *db = dbContainer->SQLiteInstance; ++ sqlite3 *db = dbContainer->SQLiteInstance; + char *errorMessage = NULL; +- int result = vtk_sqlite3_exec(db, ROLLBACK_TRANSACTION, NULL, NULL, &errorMessage); ++ int result = sqlite3_exec(db, ROLLBACK_TRANSACTION, NULL, NULL, &errorMessage); + +- if (result == VTK_SQLITE_OK) ++ if (result == SQLITE_OK) + { + this->TransactionInProgress = false; + this->SetLastErrorText(NULL); +@@ -647,11 +647,11 @@ + if (this->Active) + { + this->Active = false; +- vtk_sqlite3_reset(this->Statement); ++ sqlite3_reset(this->Statement); + } +- int status = vtk_sqlite3_bind_int(this->Statement, index+1, value); ++ int status = sqlite3_bind_int(this->Statement, index+1, value); + +- if (status != VTK_SQLITE_OK) ++ if (status != SQLITE_OK) + { + vtksys_ios::ostringstream errormessage; + errormessage << "sqlite_bind_int returned error: " << status; +@@ -676,11 +676,11 @@ + if (this->Active) + { + this->Active = false; +- vtk_sqlite3_reset(this->Statement); ++ sqlite3_reset(this->Statement); + } +- int status = vtk_sqlite3_bind_int(this->Statement, index+1, static_cast<vtk_sqlite_int64>(value)); ++ int status = sqlite3_bind_int(this->Statement, index+1, static_cast<sqlite_int64>(value)); + +- if (status != VTK_SQLITE_OK) ++ if (status != SQLITE_OK) + { + vtksys_ios::ostringstream errormessage; + errormessage << "sqlite_bind_int64 returned error: " << status; +@@ -705,12 +705,12 @@ + if (this->Active) + { + this->Active = false; +- vtk_sqlite3_reset(this->Statement); ++ sqlite3_reset(this->Statement); + } + +- int status = vtk_sqlite3_bind_double(this->Statement, index+1, value); ++ int status = sqlite3_bind_double(this->Statement, index+1, value); + +- if (status != VTK_SQLITE_OK) ++ if (status != SQLITE_OK) + { + vtksys_ios::ostringstream errormessage; + errormessage << "sqlite_bind_double returned error: " << status; +@@ -734,12 +734,12 @@ + if (this->Active) + { + this->Active = false; +- vtk_sqlite3_reset(this->Statement); ++ sqlite3_reset(this->Statement); + } + +- int status = vtk_sqlite3_bind_text(this->Statement, index+1, value, length, VTK_SQLITE_TRANSIENT); ++ int status = sqlite3_bind_text(this->Statement, index+1, value, length, SQLITE_TRANSIENT); + +- if (status != VTK_SQLITE_OK) ++ if (status != SQLITE_OK) + { + vtksys_ios::ostringstream errormessage; + errormessage << "sqlite_bind_text returned error: " << status; +@@ -763,17 +763,17 @@ + if (this->Active) + { + this->Active = false; +- vtk_sqlite3_reset(this->Statement); ++ sqlite3_reset(this->Statement); + } + + int status = +- vtk_sqlite3_bind_blob(this->Statement, ++ sqlite3_bind_blob(this->Statement, + index+1, + data, + length, +- VTK_SQLITE_TRANSIENT); ++ SQLITE_TRANSIENT); + +- if (status != VTK_SQLITE_OK) ++ if (status != SQLITE_OK) + { + vtksys_ios::ostringstream errormessage; + errormessage << "sqlite_bind_blob returned error: " << status; +@@ -797,12 +797,12 @@ + if (this->Active) + { + this->Active = false; +- vtk_sqlite3_reset(this->Statement); ++ sqlite3_reset(this->Statement); + } + +- int status = vtk_sqlite3_clear_bindings(this->Statement); ++ int status = sqlite3_clear_bindings(this->Statement); + +- if (status != VTK_SQLITE_OK) ++ if (status != SQLITE_OK) + { + vtksys_ios::ostringstream errormessage; + errormessage << "sqlite_clear_bindings returned error: " << status; +--- VTK/IO/SQL/vtkSQLiteDatabase.h ++++ VTK/IO/SQL/vtkSQLiteDatabase.h +@@ -49,7 +49,7 @@ + class vtkSQLQuery; + class vtkSQLiteQuery; + class vtkStringArray; +-struct vtk_sqlite3; ++struct sqlite3; + + class VTKIOSQL_EXPORT vtkSQLiteDatabase : public vtkSQLDatabase + { +@@ -147,7 +147,7 @@ + virtual bool ParseURL(const char* url); + + private: +- vtk_sqlite3 *SQLiteInstance; ++ sqlite3 *SQLiteInstance; + + // We want this to be private, a user of this class + // should not be setting this for any reason +--- VTK/IO/SQL/vtkSQLiteQuery.h ++++ VTK/IO/SQL/vtkSQLiteQuery.h +@@ -47,7 +47,7 @@ + class vtkSQLiteDatabase; + class vtkVariant; + class vtkVariantArray; +-struct vtk_sqlite3_stmt; ++struct sqlite3_stmt; + + class VTKIOSQL_EXPORT vtkSQLiteQuery : public vtkSQLQuery + { +@@ -155,7 +155,7 @@ + vtkSQLiteQuery(const vtkSQLiteQuery &); // Not implemented. + void operator=(const vtkSQLiteQuery &); // Not implemented. + +- vtk_sqlite3_stmt *Statement; ++ sqlite3_stmt *Statement; + bool InitialFetch; + int InitialFetchResult; + char *LastErrorText; +--- VTK/ThirdParty/sqlite/CMakeLists.txt ++++ VTK/ThirdParty/sqlite/CMakeLists.txt +@@ -1,4 +1,4 @@ +-set(vtksqlite_THIRD_PARTY 1) +-set(vtksqlite_LIBRARIES vtksqlite) ++#set(vtksqlite_THIRD_PARTY 1) ++set(vtksqlite_LIBRARIES sqlite3) + vtk_module_export_info() +-add_subdirectory(vtksqlite) ++#add_subdirectory(vtksqlite) diff --git a/sci-visualization/paraview/files/paraview-4.0.1-vtk-cg-path.patch b/sci-visualization/paraview/files/paraview-4.0.1-vtk-cg-path.patch new file mode 100644 index 000000000000..58ddde97d4fb --- /dev/null +++ b/sci-visualization/paraview/files/paraview-4.0.1-vtk-cg-path.patch @@ -0,0 +1,36 @@ +--- ParaView-3.98.0-src/VTK/CMake/FindCg.cmake ++++ ParaView-3.98.0-src/VTK/CMake/FindCg.cmake +@@ -82,6 +82,7 @@ + FIND_PROGRAM( CG_COMPILER cgc + /usr/bin + /usr/local/bin ++ /opt/nvidia-cg-toolkit/bin + DOC "The Cg Compiler" + ) + GET_FILENAME_COMPONENT(CG_COMPILER_DIR "${CG_COMPILER}" PATH) +@@ -89,6 +90,7 @@ + FIND_PATH( CG_INCLUDE_PATH Cg/cg.h + /usr/include + /usr/local/include ++ /opt/nvidia-cg-toolkit/include + ${CG_COMPILER_SUPER_DIR}/include + DOC "The directory where Cg/cg.h resides" + ) +@@ -98,6 +100,8 @@ + /usr/lib + /usr/local/lib64 + /usr/local/lib ++ /opt/nvidia-cg-toolkit/lib64 ++ /opt/nvidia-cg-toolkit/lib + ${CG_COMPILER_SUPER_DIR}/lib64 + ${CG_COMPILER_SUPER_DIR}/lib + DOC "The Cg runtime library" +@@ -108,6 +112,8 @@ + /usr/lib + /usr/local/lib64 + /usr/local/lib ++ /opt/nvidia-cg-toolkit/lib64 ++ /opt/nvidia-cg-toolkit/lib + ${CG_COMPILER_SUPER_DIR}/lib64 + ${CG_COMPILER_SUPER_DIR}/lib + DOC "The Cg runtime library" diff --git a/sci-visualization/paraview/files/paraview-4.0.1-vtknetcd.patch b/sci-visualization/paraview/files/paraview-4.0.1-vtknetcd.patch new file mode 100644 index 000000000000..a478b7dfc2d4 --- /dev/null +++ b/sci-visualization/paraview/files/paraview-4.0.1-vtknetcd.patch @@ -0,0 +1,79 @@ +adapted from debian patch need to be applied after paraview-3.14.1-removesqlite.patch + +--- ParaView-3.98.0-src/VTK/ThirdParty/netcdf/CMakeLists.txt ++++ ParaView-3.98.0-src/VTK/ThirdParty/netcdf/CMakeLists.txt +@@ -1,8 +1,8 @@ +-set(vtknetcdf_THIRD_PARTY 1) +-set(vtknetcdf_LIBRARIES vtkNetCDF vtkNetCDF_cxx) +-set(vtknetcdf_INCLUDE_DIRS +- ${vtknetcdf_SOURCE_DIR}/vtknetcdf/include +- ${vtknetcdf_BINARY_DIR}/vtknetcdf +- ) ++#set(vtknetcdf_THIRD_PARTY 1) ++set(vtknetcdf_LIBRARIES netcdf netcdf_c++) ++#set(vtknetcdf_INCLUDE_DIRS ++# ${vtknetcdf_SOURCE_DIR}/vtknetcdf/include ++# ${vtknetcdf_BINARY_DIR}/vtknetcdf ++# ) + vtk_module_export_info() +-add_subdirectory(vtknetcdf) ++#add_subdirectory(vtknetcdf) +--- ParaView-3.98.0-src/VTK/ThirdParty/netcdf/vtk_netcdf.h ++++ ParaView-3.98.0-src/VTK/ThirdParty/netcdf/vtk_netcdf.h +@@ -16,6 +16,6 @@ + #define __vtk_netcdf_h + + /* Use the netcdf library configured for VTK. */ +-#include <vtknetcdf/include/netcdf.h> ++#include <netcdf.h> + + #endif +--- ParaView-3.98.0-src/VTK/ThirdParty/netcdf/vtk_netcdfcpp.h ++++ ParaView-3.98.0-src/VTK/ThirdParty/netcdf/vtk_netcdfcpp.h +@@ -16,6 +16,6 @@ + #define __vtk_netcdfcpp_h + + /* Use the netcdf library configured for VTK. */ +-#include <vtknetcdf/cxx/netcdfcpp.h> ++#include <netcdfcpp.h> + + #endif +--- ParaView-3.98.0-src/VTK/ThirdParty/exodusII/vtkexodusII/test/CMakeLists.txt ++++ ParaView-3.98.0-src/VTK/ThirdParty/exodusII/vtkexodusII/test/CMakeLists.txt +@@ -21,7 +21,7 @@ + ) + + add_executable(ExoIICTests ${ExoIICTests}) +-target_link_libraries(ExoIICTests vtkCommon vtkexoIIc vtkNetCDF) ++target_link_libraries(ExoIICTests vtkCommon vtkexoIIc netcdf) + + set(TestsToRun ${ExoIICTests}) + remove(TestsToRun ExoIICTests.cxx) +--- ParaView-3.98.0-src/VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt ++++ ParaView-3.98.0-src/VTK/ThirdParty/exodusII/vtkexodusII/CMakeLists.txt +@@ -241,7 +241,7 @@ + + + VTK_ADD_LIBRARY(vtkexoIIc ${cbind_SRCS}) +-TARGET_LINK_LIBRARIES(vtkexoIIc vtkNetCDF) ++TARGET_LINK_LIBRARIES(vtkexoIIc netcdf) + + IF(NOT VTK_INSTALL_NO_DEVELOPMENT) + # INSTALL_FILES(${VTK_INSTALL_INCLUDE_DIR}/vtkexodus2 .h +--- ParaView-3.98.0-src/VTK/IO/NetCDF/CMakeLists.txt ++++ ParaView-3.98.0-src/VTK/IO/NetCDF/CMakeLists.txt +@@ -10,5 +10,5 @@ + + vtk_module_library(vtkIONetCDF ${Module_SRCS}) + +-target_link_libraries(vtkIONetCDF vtkNetCDF_cxx) ++target_link_libraries(vtkIONetCDF netcdf netcdf_c++) + set_target_properties(vtkIONetCDF PROPERTIES LINK_INTERFACE_LIBRARIES "") +--- ParaView-3.98.0-src/VTK/IO/ParallelNetCDF/CMakeLists.txt ++++ ParaView-3.98.0-src/VTK/IO/ParallelNetCDF/CMakeLists.txt +@@ -8,4 +8,4 @@ + + vtk_module_library(vtkIOParallelNetCDF ${Module_SRCS}) + +-target_link_libraries(vtkIOParallelNetCDF vtkNetCDF_cxx) ++target_link_libraries(vtkIOParallelNetCDF netcdf netcdf_c++) diff --git a/sci-visualization/paraview/files/paraview-4.0.1-xdmf-cstring.patch b/sci-visualization/paraview/files/paraview-4.0.1-xdmf-cstring.patch new file mode 100644 index 000000000000..665f40ad4fa7 --- /dev/null +++ b/sci-visualization/paraview/files/paraview-4.0.1-xdmf-cstring.patch @@ -0,0 +1,12 @@ +gcc header fix + +--- ParaView-3.98.0-src/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfObject.h ++++ ParaView-3.98.0-src/VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/XdmfObject.h +@@ -82,6 +82,7 @@ + # ifdef UNIX + # include "sys/file.h" + # include "strings.h" ++# include <cstring> + # define STRCASECMP strcasecmp + # define STRNCASECMP strncasecmp + # define STRCMP strcmp diff --git a/sci-visualization/paraview/paraview-4.0.1.ebuild b/sci-visualization/paraview/paraview-4.0.1.ebuild new file mode 100644 index 000000000000..a5df7de36a74 --- /dev/null +++ b/sci-visualization/paraview/paraview-4.0.1.ebuild @@ -0,0 +1,271 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-visualization/paraview/paraview-4.0.1.ebuild,v 1.1 2013/07/01 23:33:28 hasufell Exp $ + +EAPI=5 + +PYTHON_COMPAT=( python2_6 python2_7 ) +inherit eutils multilib versionator python-single-r1 cmake-utils + +MAIN_PV=$(get_major_version) +MAJOR_PV=$(get_version_component_range 1-2) +MY_P="ParaView-v${PV}-source" + +DESCRIPTION="ParaView is a powerful scientific data visualization application" +HOMEPAGE="http://www.paraview.org" +SRC_URI="http://www.paraview.org/files/v${MAJOR_PV}/${MY_P}.tgz" +RESTRICT="mirror" + +LICENSE="paraview GPL-2" +KEYWORDS="~amd64 ~x86" +SLOT="0" +IUSE="boost cg coprocessing development doc examples ffmpeg mpi mysql nvcontrol plugins python qt4 sqlite tcl test tk" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +RDEPEND=" + dev-libs/expat + dev-libs/libxml2:2 + dev-libs/protobuf + media-libs/freetype + media-libs/libpng:0 + media-libs/libtheora + media-libs/tiff + sci-libs/hdf5[mpi=] + ~sci-libs/netcdf-4.1.3[cxx,hdf5] + sys-libs/zlib + virtual/jpeg + virtual/opengl + >=x11-libs/gl2ps-1.3.8 + x11-libs/libX11 + x11-libs/libXext + x11-libs/libXmu + x11-libs/libXt + coprocessing? ( + plugins? ( + dev-python/PyQt4 + dev-qt/qtgui:4 + ) + ) + ffmpeg? ( virtual/ffmpeg ) + mpi? ( virtual/mpi[cxx,romio] ) + mysql? ( virtual/mysql ) + python? ( + ${PYTHON_DEPS} + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/mpi4py + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/sip[${PYTHON_USEDEP}] + dev-python/twisted + net-zope/zope-interface[${PYTHON_USEDEP}] + mpi? ( dev-python/mpi4py ) + qt4? ( dev-python/PyQt4[opengl,webkit,${PYTHON_USEDEP}] ) + ) + qt4? ( + dev-qt/qtgui:4 + dev-qt/qtopengl:4 + dev-qt/qthelp:4[compat] + dev-qt/qtsql:4 + dev-qt/qtwebkit:4 + ) + sqlite? ( dev-db/sqlite ) + tcl? ( dev-lang/tcl ) + tk? ( dev-lang/tk )" +DEPEND="${RDEPEND} + ${PYTHON_DEPS} + boost? ( >=dev-libs/boost-1.40.0[mpi?,${PYTHON_USEDEP}] ) + doc? ( app-doc/doxygen )" + +S=${WORKDIR}/${MY_P} + +pkg_setup() { + python-single-r1_pkg_setup + PVLIBDIR=$(get_libdir)/${PN}-${MAJOR_PV} +} + +src_prepare() { + # see patch headers for description + epatch "${FILESDIR}"/${P}-xdmf-cstring.patch \ + "${FILESDIR}"/${P}-removesqlite.patch \ + "${FILESDIR}"/${P}-gcc-4.7.patch \ + "${FILESDIR}"/${P}-vtknetcd.patch \ + "${FILESDIR}"/${P}-vtk-cg-path.patch + + # lib64 fixes + sed -i \ + -e "s:/usr/lib:${EPREFIX}/usr/$(get_libdir):g" \ + VTK/ThirdParty/xdmf2/vtkxdmf2/libsrc/CMakeLists.txt || die + sed -i \ + -e "s:\/lib\/python:\/$(get_libdir)\/python:g" \ + VTK/ThirdParty/xdmf2/vtkxdmf2/CMake/setup_install_paths.py || die + sed -i \ + -e "s:lib/paraview-:$(get_libdir)/paraview-:g" \ + CMakeLists.txt \ + Plugins/SciberQuestToolKit/CMakeLists.txt \ + ParaViewConfig.cmake.in \ + CoProcessing/PythonCatalyst/vtkCPPythonScriptPipeline.cxx \ + ParaViewCore/ClientServerCore/Core/vtkProcessModuleInitializePython.h || die + + # no proper switch + use nvcontrol || { + sed -i \ + -e '/VTK_USE_NVCONTROL/s#1#0#' \ + VTK/Rendering/OpenGL/CMakeLists.txt || die + } +} + +src_configure() { + # TODO: use system protobuf, jsoncpp + # VTK_USE_SYSTEM_QTTESTING + # PARAVIEW_USE_SYSTEM_AUTOBAHN + local mycmakeargs=( + -DPV_INSTALL_LIB_DIR="${PVLIBDIR}" + -DCMAKE_INSTALL_PREFIX="${EPREFIX}"/usr + -DEXPAT_INCLUDE_DIR="${EPREFIX}"/usr/include + -DEXPAT_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libexpat.so + -DOPENGL_gl_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGL.so + -DOPENGL_glu_LIBRARY="${EPREFIX}"/usr/$(get_libdir)/libGLU.so + -DBUILD_SHARED_LIBS=ON + -DVTK_USE_SYSTEM_EXPAT=ON + -DVTK_USE_SYSTEM_FREETYPE=ON + -DVTK_USE_SYSTEM_GL2PS=ON + -DVTK_USE_SYSTEM_HDF5=ON + -DVTK_USE_SYSTEM_JPEG=ON + -DVTK_USE_SYSTEM_LIBXML2=ON + -DVTK_USE_SYSTEM_OGGTHEORA=ON + -DVTK_USE_SYSTEM_PNG=ON + -DVTK_USE_SYSTEM_PROTOBUF=OFF + -DVTK_USE_SYSTEM_TIFF=ON + -DVTK_USE_SYSTEM_XDMF2=OFF + -DVTK_USE_SYSTEM_ZLIB=ON + -DPARAVIEW_USE_SYSTEM_MPI4PY=ON + -DPARAVIEW_USE_SYSTEM_ZOPE=ON + -DPARAVIEW_USE_SYSTEM_TWISTED=ON + -DCMAKE_VERBOSE_MAKEFILE=ON + -DCMAKE_COLOR_MAKEFILE=TRUE + -DVTK_USE_OFFSCREEN=TRUE + -DCMAKE_USE_PTHREADS=ON + -DVTK_USE_FFMPEG_ENCODER=OFF + -DPROTOC_LOCATION=$(type -P protoc) + -DVTK_Group_StandAlone=ON + # force this module due to incorrect build system deps + # wrt bug 460528 + -DModule_vtkUtilitiesProcessXML=ON + ) + + # TODO: XDMF_USE_MYSQL? + # VTK_WRAP_JAVA + mycmakeargs+=( + $(cmake-utils_use development PARAVIEW_INSTALL_DEVELOPMENT_FILES) + $(cmake-utils_use qt4 PARAVIEW_BUILD_QT_GUI) + $(cmake-utils_use qt4 Module_vtkGUISupportQtOpenGL) + $(cmake-utils_use qt4 Module_vtkGUISupportQtSQL) + $(cmake-utils_use qt4 Module_vtkGUISupportQtWebkit) + $(cmake-utils_use qt4 Module_vtkRenderingQt) + $(cmake-utils_use qt4 Module_vtkViewsQt) + $(cmake-utils_use qt4 VTK_Group_ParaViewQt) + $(cmake-utils_use qt4 VTK_Group_Qt) + $(cmake-utils_use !qt4 PQWIDGETS_DISABLE_QTWEBKIT) + $(cmake-utils_use boost Module_vtkInfovisBoost) + $(cmake-utils_use boost Module_vtkInfovisBoostGraphAlg) + $(cmake-utils_use mpi PARAVIEW_USE_MPI) + $(cmake-utils_use mpi PARAVIEW_USE_MPI_SSEND) + $(cmake-utils_use mpi PARAVIEW_USE_ICE_T) + $(cmake-utils_use mpi VTK_Group_MPI) + $(cmake-utils_use mpi VTK_XDMF_USE_MPI) + $(cmake-utils_use mpi XDMF_BUILD_MPI) + $(cmake-utils_use python PARAVIEW_ENABLE_PYTHON) + $(cmake-utils_use python VTK_Group_ParaViewPython) + $(cmake-utils_use python XDMF_WRAP_PYTHON) + $(cmake-utils_use python Module_vtkPython) + $(cmake-utils_use python Module_pqPython) + $(cmake-utils_use python Module_vtkWrappingPythonCore) + $(cmake-utils_use python Module_vtkPVPythonSupport) + $(cmake-utils_use python Module_AutobahnPython) + $(cmake-utils_use python Module_Twisted) + $(cmake-utils_use python Module_ZopeInterface) + $(cmake-utils_use python Module_vtkmpi4py) + $(cmake-utils_use python Module_pqPython) + $(cmake-utils_use doc BUILD_DOCUMENTATION) + $(cmake-utils_use doc PARAVIEW_BUILD_WEB_DOCUMENTATION) + $(cmake-utils_use examples BUILD_EXAMPLES) + $(cmake-utils_use cg VTK_USE_CG_SHADERS) + $(cmake-utils_use mysql Module_vtkIOMySQL) + $(cmake-utils_use sqlite Module_vtksqlite) + $(cmake-utils_use coprocessing PARAVIEW_ENABLE_CATALYST) + $(cmake-utils_use ffmpeg PARAVIEW_ENABLE_FFMPEG) + $(cmake-utils_use ffmpeg VTK_USE_FFMPEG_ENCODER) + $(cmake-utils_use ffmpeg Module_vtkIOFFMPEG) + $(cmake-utils_use tk VTK_Group_Tk) + $(cmake-utils_use tk VTK_USE_TK) + $(cmake-utils_use tk Module_vtkRenderingTk) + $(cmake-utils_use tcl Module_vtkTclTk) + $(cmake-utils_use tcl Module_vtkWrappingTcl) + $(cmake-utils_use test BUILD_TESTING) + ) + + if use qt4 ; then + mycmakeargs+=( -DVTK_INSTALL_QT_DIR=/${PVLIBDIR}/plugins/designer ) + if use python ; then + # paraview cannot guess sip directory properly + mycmakeargs+=( -DSIP_INCLUDE_DIR="${EPREFIX}$(python_get_includedir)" ) + fi + fi + + # TODO: MantaView VaporPlugin VRPlugin + mycmakeargs+=( + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_AdiosReader) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_AnalyzeNIfTIIO) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_ArrowGlyph) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_EyeDomeLighting) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_ForceTime) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_GMVReader) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_H5PartReader) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_Moments) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_NonOrthogonalSource) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_PacMan) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_PointSprite) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_PrismPlugin) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_QuadView) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SLACTools) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SciberQuestToolKit) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SierraPlotTools) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_SurfaceLIC) + $(cmake-utils_use plugins PARAVIEW_BUILD_PLUGIN_UncertaintyRendering) + # these are always needed for plugins + $(cmake-utils_use plugins Module_vtkFiltersFlowPaths) + $(cmake-utils_use plugins Module_vtkPVServerManagerApplication) + ) + + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile +} + +src_install() { + cmake-utils_src_install + + # set up the environment + echo "LDPATH=${EPREFIX}/usr/${PVLIBDIR}" > "${T}"/40${PN} + echo "PYTHONPATH="${EPREFIX}"/usr/${PVLIBDIR}:/usr/${PVLIBDIR}/site-packages" >> "${T}"/40${PN} + doenvd "${T}"/40${PN} + + newicon "${S}"/Applications/ParaView/pvIcon.png paraview.png + make_desktop_entry paraview "Paraview" paraview + + use python && python_optimize "${D}"/usr/$(get_libdir)/${PN}-${MAJOR_PV} +} + +pkg_postinst() { + # with Qt4.5 there seem to be issues reading data files + # under certain locales. Setting LC_ALL=C should fix these. + echo + elog "If you experience data corruption during parsing of" + elog "data files with paraview please try setting your" + elog "locale to LC_ALL=C." + elog "If you plan to use paraview component from an existing shell" + elog "you should run env-update and . /etc/profile first" + echo +} |