From 56bd759df1d0c750a065b8c845e93d5dfa6b549d Mon Sep 17 00:00:00 2001 From: "Robin H. Johnson" Date: Sat, 8 Aug 2015 13:49:04 -0700 Subject: proj/gentoo: Initial commit MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson X-Thanks: Alec Warner - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring - wrote much python to improve cvs2svn X-Thanks: Rich Freeman - validation scripts X-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed --- sci-mathematics/normaliz/Manifest | 1 + .../files/normaliz-2.12.1-respect-flags.patch | 47 ++++++++++++++++ .../normaliz/files/normaliz-2.12.2-gcc49.patch | 11 ++++ sci-mathematics/normaliz/metadata.xml | 17 ++++++ sci-mathematics/normaliz/normaliz-2.12.2.ebuild | 64 ++++++++++++++++++++++ 5 files changed, 140 insertions(+) create mode 100644 sci-mathematics/normaliz/Manifest create mode 100644 sci-mathematics/normaliz/files/normaliz-2.12.1-respect-flags.patch create mode 100644 sci-mathematics/normaliz/files/normaliz-2.12.2-gcc49.patch create mode 100644 sci-mathematics/normaliz/metadata.xml create mode 100644 sci-mathematics/normaliz/normaliz-2.12.2.ebuild (limited to 'sci-mathematics/normaliz') diff --git a/sci-mathematics/normaliz/Manifest b/sci-mathematics/normaliz/Manifest new file mode 100644 index 000000000000..34b83e0618e5 --- /dev/null +++ b/sci-mathematics/normaliz/Manifest @@ -0,0 +1 @@ +DIST Normaliz2.12.2.zip 6432949 SHA256 230772425b3c9964b9e144c0919c75fac0ec95260a1943c10a8a94eea9d7273e SHA512 fd42071cb87b8efbaf9af0885c173a0583e0b38dedb8821a83225eeebb44060a7b5748c44adfc4faeac20c3a1706071bcb9883cb4447e4a1ff3aeb770bd22038 WHIRLPOOL cb2974e02eac6e6d51c234214a719a24ad2e12d1400f0a6f8aee3e7a4ba3aa2ba053beec65c9032f42726e4dd4f1866820bb5b7b96f7c3d34cd132fcdbdb91af diff --git a/sci-mathematics/normaliz/files/normaliz-2.12.1-respect-flags.patch b/sci-mathematics/normaliz/files/normaliz-2.12.1-respect-flags.patch new file mode 100644 index 000000000000..d7d83ee79d91 --- /dev/null +++ b/sci-mathematics/normaliz/files/normaliz-2.12.1-respect-flags.patch @@ -0,0 +1,47 @@ +diff -U 3 -dHrN Normaliz2.12/source/Makefile Normaliz2.12.patched/source/Makefile +--- Normaliz2.12/source/Makefile 2014-10-23 15:01:56.000000000 +0200 ++++ Normaliz2.12.patched/source/Makefile 2014-10-25 14:56:39.426295174 +0200 +@@ -17,16 +17,16 @@ + @$(MAKE) normaliz + + normaliz.o: $(SOURCES) $(HEADERS) $(LIBHEADERS) +- $(CXX) $(CXXFLAGS) $(NORMFLAGS) -c Normaliz.cpp -o normaliz.o ++ $(CXX) $(CXXFLAGS) $(LDFLAGS) -c Normaliz.cpp -o normaliz.o + + normaliz: $(SOURCES) $(HEADERS) normaliz.o libnormaliz/libnormaliz.a +- $(CXX) $(CXXFLAGS) $(NORMFLAGS) normaliz.o libnormaliz/libnormaliz.a $(GMPFLAGS) -o normaliz ++ $(CXX) $(CXXFLAGS) $(LDFLAGS) normaliz.o libnormaliz/libnormaliz.a $(GMPFLAGS) -o normaliz + + normaliz1: $(SOURCES) $(HEADERS) $(LIBHEADERS) $(LIBSOURCES) +- $(CXX) $(CXXFLAGS) $(NORMFLAGS) Normaliz-impl.cpp $(GMPFLAGS) -o normaliz1 ++ $(CXX) $(CXXFLAGS) $(LDFLAGS) Normaliz-impl.cpp $(GMPFLAGS) -o normaliz1 + + normaliz-pg: $(SOURCES) $(HEADERS) $(LIBHEADERS) $(LIBSOURCES) +- $(CXX) $(CXXFLAGS) $(NORMFLAGS) -pg Normaliz-impl.cpp $(GMPFLAGS) -o normaliz-pg ++ $(CXX) $(CXXFLAGS) $(LDFLAGS) -pg Normaliz-impl.cpp $(GMPFLAGS) -o normaliz-pg + + + #always go down the directory and let the make there check what has to be done +diff -U 3 -dHrN Normaliz2.12/source/Makefile.configuration Normaliz2.12.patched/source/Makefile.configuration +--- Normaliz2.12/source/Makefile.configuration 2014-10-23 15:01:56.000000000 +0200 ++++ Normaliz2.12.patched/source/Makefile.configuration 2014-10-25 15:18:39.876313342 +0200 +@@ -1,11 +1,9 @@ + ## + ## Makefile configuration for normaliz + ## +-CXX = g++ + #CXX = linux32 g++ -m32 -march=i686 #compile it for linux32 + CXXFLAGS += -std=c++0x + CXXFLAGS += -Wall -pedantic +-CXXFLAGS += -O3 -funroll-loops + #CXXFLAGS += -I /usr/local/boost_1_45_0 + CXXFLAGS += -g ## debugging + #CXXFLAGS += -pg ## profiling +@@ -19,7 +17,6 @@ + endif + + ## for distributing the executables link static (does not work for mac) +-CXXFLAGS += -static + ## for almost static compilation on Mac use + #CXXFLAGS += -static-libgcc + ## make it compatible with older Mac versions diff --git a/sci-mathematics/normaliz/files/normaliz-2.12.2-gcc49.patch b/sci-mathematics/normaliz/files/normaliz-2.12.2-gcc49.patch new file mode 100644 index 000000000000..35a28c8cf2a3 --- /dev/null +++ b/sci-mathematics/normaliz/files/normaliz-2.12.2-gcc49.patch @@ -0,0 +1,11 @@ +diff -U 3 -dHrN Normaliz2.12/source/libnormaliz/general.h Normaliz2.12.patched/source/libnormaliz/general.h +--- Normaliz2.12/source/libnormaliz/general.h 2014-10-23 15:01:56.000000000 +0200 ++++ Normaliz2.12.patched/source/libnormaliz/general.h 2015-03-01 13:20:01.057017555 +0100 +@@ -27,6 +27,7 @@ + + #include + #include ++#include + + #ifdef _WIN32 //for 32 and 64 bit windows + #define NMZ_MPIR //always use MPIR diff --git a/sci-mathematics/normaliz/metadata.xml b/sci-mathematics/normaliz/metadata.xml new file mode 100644 index 000000000000..6b793e001efd --- /dev/null +++ b/sci-mathematics/normaliz/metadata.xml @@ -0,0 +1,17 @@ + + + + + tomka@gentoo.org + Thomas Kahle + + sci-mathematics + + Install sci-mathematics/Macaulay2 and sci-mathematics/singular + packages as shipped by upstream + + +Normaliz is a (command line) tool for computations in affine monoids, vector configurations, lattice polytopes, and +rational cones. + + diff --git a/sci-mathematics/normaliz/normaliz-2.12.2.ebuild b/sci-mathematics/normaliz/normaliz-2.12.2.ebuild new file mode 100644 index 000000000000..5a9cf0a3bf02 --- /dev/null +++ b/sci-mathematics/normaliz/normaliz-2.12.2.ebuild @@ -0,0 +1,64 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils toolchain-funcs versionator + +MYPV=$(get_version_component_range 1-2) +MYP="Normaliz${MYPV}" + +DESCRIPTION="Tool for computations in affine monoids and more" +HOMEPAGE="http://www.mathematik.uni-osnabrueck.de/normaliz/" +SRC_URI="http://www.mathematik.uni-osnabrueck.de/${PN}/Normaliz${PV}/Normaliz${PV}.zip" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="amd64 x86" +IUSE="doc extras openmp" + +RDEPEND="dev-libs/gmp[cxx]" +DEPEND="${RDEPEND} + app-arch/unzip + dev-libs/boost" +# Only a boost header is needed -> not RDEPEND + +S=${WORKDIR}/${MYP} + +src_prepare () { + epatch "${FILESDIR}/${PN}-2.12.1-respect-flags.patch" + epatch "${FILESDIR}/${PN}-2.12.2-gcc49.patch" + + # Respect users AR tool (Bug 474532) + sed -e "s:ar -cr:$(tc-getAR) -cr:" -i source/libnormaliz/Makefile || die + + if use openmp && tc-has-openmp; then + export OPENMP=yes + else + export OPENMP=no + fi +} + +src_compile(){ + emake CXX="$(tc-getCXX)" OPENMP="${OPENMP}" -C source +} + +src_install() { + dobin source/normaliz + if use doc ; then + dodoc doc/"Normaliz.pdf" + dodoc doc/"NmzIntegrate.pdf" + fi + if use extras; then + elog "You have selected to install extras which consist of Macaulay2" + elog "and Singular packages. These have been installed into " + elog "/usr/share/${PN}, and cannot be used without additional setup. Please refer" + elog "to the homepages of the respective projects for additional information." + elog "Note however, Gentoo's versions of Singular and Macaulay2 bring their own" + elog "copies of these interface packages. Usually you don't need normaliz's versions." + insinto "/usr/share/${PN}" + doins Singular/normaliz.lib + doins Macaulay2/Normaliz.m2 + fi +} -- cgit v1.2.3-65-gdbad