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* sci-libs/gdal: bump 3.9.0 incl use parquetThomas Bettler2024-06-213-0/+289
| | | | | | Signed-off-by: Thomas Bettler <thomas.bettler@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/37112 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cfitsio: Bump to 4.4.1Michał Górny2024-06-192-0/+78
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cfitsio: Remove oldMichał Górny2024-06-1911-543/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/umfpack: update EAPI 7 -> 8Eli Schwartz2024-06-171-0/+48
| | | | | | | | (In the version that isn't p.masked because the entire suitesparse ecosystem cannot multilib after the version bump.) Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/umfpack: make sure elibtoolize is appliedEli Schwartz2024-06-171-2/+7
| | | | | | | Needed to e.g. pass LTO warning flags through to the linker. Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cholmod: fix missing autotools in src_prepareEli Schwartz2024-06-172-3/+7
| | | | | | | | | | Fixes regression caused by introducing a gentoo patch that modifies Makefile.am, but doesn't guarantee that it is regenerated in src_configure() -- or indeed that it has the necessary dependencies. Fixes: 6c0474cc8a08172cdc244af680edba8be5ada95b Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/beagle: treecleanArthur Zamarin2024-06-166-201/+0
| | | | | | | Bug: https://bugs.gentoo.org/862669 Bug: https://bugs.gentoo.org/890423 Bug: https://bugs.gentoo.org/873262 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/linux-gpib: Stabilize 4.3.6-r3 amd64, #933041Matoro Mahri2024-06-151-1/+1
| | | | | Signed-off-by: Matoro Mahri <matoro_gentoo@matoro.tk> Signed-off-by: Viorel Munteanu <ceamac@gentoo.org>
* sci-libs/linux-gpib-modules: Stabilize 4.3.6 amd64, #933040Matoro Mahri2024-06-141-1/+1
| | | | | Signed-off-by: Matoro Mahri <matoro_gentoo@matoro.tk> Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/cfitsio: Add conditional test-RESTRICTMichał Górny2024-06-131-0/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cfitsio: Add myself as a co-maintainerMichał Górny2024-06-131-0/+5
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cfitsio: Bump to 4.4.0Michał Górny2024-06-132-0/+77
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/cifparse-obj: treecleanArthur Zamarin2024-06-125-189/+0
| | | | | | | | | | | Closes: https://bugs.gentoo.org/931861 Bug: https://bugs.gentoo.org/646346 Bug: https://bugs.gentoo.org/685552 Bug: https://bugs.gentoo.org/725426 Bug: https://bugs.gentoo.org/731896 Bug: https://bugs.gentoo.org/751550 Bug: https://bugs.gentoo.org/799620 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libghemical: treecleanArthur Zamarin2024-06-124-75/+0
| | | | | | | | | | Closes: https://bugs.gentoo.org/931860 Bug: https://bugs.gentoo.org/891895 Bug: https://bugs.gentoo.org/850739 Bug: https://bugs.gentoo.org/831798 Bug: https://bugs.gentoo.org/514352 Bug: https://bugs.gentoo.org/466112 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libsigrok: fix broken 9999 syncSam James2024-06-111-14/+7
| | | | | Fixes: 0c2c5e8a704527b0d86548796f074b26bf339cda Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsigrok: Stabilize 0.5.2-r4 amd64, #934061Sam James2024-06-111-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsigrok: enable py3.13Sam James2024-06-113-9/+220
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsigrokdecode: enable py3.13Sam James2024-06-113-2/+97
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsigrok: enable py3.12Sam James2024-06-112-2/+2
| | | | | Closes: https://bugs.gentoo.org/929778 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsigrok: disable py3.9Sam James2024-06-113-3/+3
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsigrokdecode: enable py3.12Sam James2024-06-112-4/+4
| | | | | Closes: https://bugs.gentoo.org/929779 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/trilinos: [QA] fix order of variable declarationsMatthias Maier2024-06-103-11/+11
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: add 15.1.1Matthias Maier2024-06-102-0/+251
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/arprec: EAPI 6 -> 8Arthur Zamarin2024-06-091-12/+15
| | | | | Closes: https://bugs.gentoo.org/526960 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/libticables2: EAPI 6 -> 8Arthur Zamarin2024-06-081-14/+17
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/pgplot: drop 5.2.2-r7Arthur Zamarin2024-06-071-174/+0
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/pgplot: Stabilize 5.2.2-r8 amd64, #933759Arthur Zamarin2024-06-071-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/gdal: Stabilize 3.8.5 ppc64, #933036Arthur Zamarin2024-06-071-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/caffe2: fix patchingAlfredo Tupone2024-06-071-3/+3
| | | | | Closes: https://bugs.gentoo.org/933713 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/indilib: add 2.0.8Andreas Sturmlechner2024-06-062-0/+86
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/indilib: drop 2.0.6Andreas Sturmlechner2024-06-062-86/+0
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/caffe2: add 2.3.1Alfredo Tupone2024-06-062-0/+275
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/libqalculate: Stabilize 4.8.1 ppc, #924610Arthur Zamarin2024-06-051-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/cholmod: 3.0.14-r1 change slot to 0/3Paul Zander2024-06-051-2/+2
| | | | | | | | | The .so name changed from libcholmod.so.0 to libcholmod.so.3 so we need to adjust the subslot to cause rebuilds after the upgrade. Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/34543 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gdal: Stabilize 3.8.5 arm64, #933036Arthur Zamarin2024-06-051-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/nlopt: enable py3.12Andrew Ammerlaan2024-06-041-1/+1
| | | | | Closes: https://bugs.gentoo.org/929783 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/stellarsolver: Stabilize 2.5-r1 amd64, #931913Arthur Zamarin2024-06-041-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/indilib: Stabilize 2.0.7 amd64, #931913Arthur Zamarin2024-06-041-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/gdal: Stabilize 3.8.5 x86, #933036Arthur Zamarin2024-06-041-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/blis: Keyword 1.0 arm64, #933473Sam James2024-06-041-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/med: enable py3.12Andrew Ammerlaan2024-06-031-2/+2
| | | | | Closes: https://bugs.gentoo.org/929782 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/blis: add 1.0Sv. Lockal2024-06-033-0/+151
| | | | | | | | | | Changes from 0.9: * Added patch to not install /usr/include/cblas.h, as it conflicts with sci-libs/lapack * aarch64 now builds/passes tests (in qemu), can be keyworded later Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/36974 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/blis: don't autodetect CPU, build according to cpu_flags_*Sv. Lockal2024-06-031-18/+41
| | | | | | | | | | | | | | | | | | | | | | | | This PR closes multiple issues: * binary packaging had flaws, because even on x86-64 target machine won't always match host cpu * crossdev compilation did not work, because correct compilers were not passed * tests did not work, because LD_LIBRARY_PATH had hardcoded `haswell` target * PYTHON_COMPAT: drop 3.9, add 3.12 and 3.13 This also adds few checks for aarch64 architecture, but aarch64 was not added to KEYWORDS, as few tests failed (in 0.9, not in 1.0). Note that while cpu_flags_*-based configuration resembles automatic one, it is not fully the same. For example, there are 2 types of Skylake CPUs: with 1 or 2 FMA units. Attempt to enable cpu_flags_x86_avx512vl on CPUs with 1 FMA unit will result in reduced performance. Previously this was handled by automatic detection of 1FMA Skylake as Haswell; now user should not specify cpu_flags_x86_avx512vl if CPU has degraded AVX-512 support. Closes: https://bugs.gentoo.org/928018 Closes: https://bugs.gentoo.org/765805 Closes: https://bugs.gentoo.org/929769 Signed-off-by: Sv. Lockal <lockalsash@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gdal: Stabilize 3.8.5 amd64, #933036Sam James2024-06-031-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: enable py3.12, py3.13Sam James2024-06-021-1/+1
| | | | | Closes: https://bugs.gentoo.org/929777 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: enable py3.12Andrew Ammerlaan2024-06-011-1/+1
| | | | | Closes: https://bugs.gentoo.org/929788 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/keras-preprocessing: treecleanArthur Zamarin2024-05-313-38/+0
| | | | | | Closes: https://bugs.gentoo.org/929776 Bug: https://bugs.gentoo.org/926315 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/keras-applications: treecleanArthur Zamarin2024-05-313-33/+0
| | | | | Closes: https://bugs.gentoo.org/929775 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/pytorch: remove unused patchMichael Mair-Keimberger2024-05-301-13/+0
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/netcdf: Stabilize 4.9.2-r1 amd64, #931347Matoro Mahri2024-05-301-1/+1
| | | | | Signed-off-by: Matoro Mahri <matoro_gentoo@matoro.tk> Signed-off-by: Ionen Wolkens <ionen@gentoo.org>