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* sci-libs/trilinos: disable broken module, add commentMatthias Maier2022-06-121-2/+11
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: try to fix RPATHMatthias Maier2022-06-121-0/+1
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/arborx: initial importMatthias Maier2022-06-123-0/+58
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: fix ebuildMatthias Maier2022-06-111-1/+0
| | | | | | - This file only gets created if the SRC_DIR is a git repository Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: add 13.4.0Matthias Maier2022-06-113-1/+223
| | | | | Closes: https://bugs.gentoo.org/847034 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/miopen: add 5.0.2Yiyang Wu2022-06-115-0/+361
| | | | | | | | | Changes: patch the sources a bit to support gfx1031 Closes: https://github.com/gentoo/gentoo/pull/25851 Closes: https://bugs.gentoo.org/851102 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/hypre: add 2.24.0Matthias Maier2022-06-112-0/+110
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/trilinos: fix underlinkage by disabling zadelus as wellMatthias Maier2022-06-111-0/+0
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/symengine: als fix user configuration for USE=llvmMatthias Maier2022-06-114-100/+16
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/symengine: add USE=llvm patches to remaining ebuildsMatthias Maier2022-06-113-4/+6
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/symengine: drop 0.6.0-r1, 0.7.0-r1Matthias Maier2022-06-113-178/+0
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/symengine: fix USE=llvmMatthias Maier2022-06-112-0/+54
| | | | | Closes: https://bugs.gentoo.org/745915 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/netcdf: add 4.9.0Sam James2022-06-112-0/+76
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/htslib: add 1.15.1David Seifert2022-06-102-0/+53
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libaec: add 1.0.6Andrew Ammerlaan2022-06-102-0/+45
| | | | | Closes: https://bugs.gentoo.org/849806 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cfitsio: add 4.1.0Andrew Ammerlaan2022-06-105-0/+160
| | | | | | | Co-authored-by: Alexander Wessel <flexx@chello.at> Closes: https://bugs.gentoo.org/847595 Signed-off-by Alexander Wessel <flexx@chello.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/hipBLAS: bump version to 5.0.2Yiyang Wu2022-06-102-0/+43
| | | | | | | | Bug: https://github.com/gentoo/gentoo/pull/25830 Bug: https://bugs.gentoo.org/847469 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/hipFFT: bump version to 5.0.2Yiyang Wu2022-06-104-0/+142
| | | | | | | | Closes: https://github.com/gentoo/gentoo/pull/25830 Bug: https://bugs.gentoo.org/847469 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/hdf5: forward ~s390Sam James2022-06-091-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf5: Set H5_DEFAULT_PLUGINDIR.Berrysoft2022-06-091-0/+125
| | | | | | | | | | | | | HDF5 sets is default plugin dir to /usr/local/hdf5/lib/plugin. It is reasonable in most cases, but not very well for Gentoo. In Gentoo, the lib directory is not always `lib`, and the prefix is not always `/`. Therefore, it is more reasonable to set the default dir under ${EPREFIX}, and change `lib` to the right lib dir name. Signed-off-by: Yuyi Wang <Strawberry_Str@hotmail.com> Closes: https://github.com/gentoo/gentoo/pull/25814 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: avoid broken libdl hardcodingSam James2022-06-081-0/+83
| | | | | Closes: https://bugs.gentoo.org/827188 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/symengine: fix pthread detectionSam James2022-06-083-0/+162
| | | | | Closes: https://bugs.gentoo.org/849803 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/dealii: fix live ebuildMatthias Maier2022-06-071-2/+2
| | | | | | | | | | - do not allow bundled libraries to be configured - remove redundant statement - disable dysfunctional taskflow dependency Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libsigrok: Stabilize 0.5.2-r3 x86, #849902Joonas Niilola2022-06-071-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/cantera: fix copyright headerSam James2022-06-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: restrict sci-libs/sundials for sci-libs/cantera[lapack]Sergey Torokhov2022-06-074-3/+32
| | | | | | | | | | | | | | | | | | It seems that >=sci-libs/cantera-2.5.1-r3[lapack] tests are currently broken if build against >=sci-libs/sundials-5.8.0[lapack]. The cantera-2.5.1_env.patch is updated here to proper check if >=sundials-5.5 is build with lapack support. This change doesn't affect cantera-2.5.1-r1 at all and allow to build cantera-2.5.1-r3 against sundials[lapack] but in cantera-2.5.1-r4 restriction of sundials is used. So revbump is assumed to keep stablized. Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/25779 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: 2.6.0 fix install for >=dev-python/pip-22.1.1Sergey Torokhov2022-06-071-0/+21
| | | | | | | Closes: https://bugs.gentoo.org/849938 Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libsigrok: Stabilize 0.5.2-r3 amd64, #849902Joonas Niilola2022-06-071-1/+1
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/gmsh: set USE=+blas to satisfy "exactly one of" constraintMatthias Maier2022-06-061-1/+1
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gmsh: clean and fix USE flagsFabio Rossi2022-06-062-13/+48
| | | | | Signed-off-by: Fabio Rossi <rossi.f@inwind.it> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gmsh: added latest versionFabio Rossi2022-06-062-0/+81
| | | | | Signed-off-by: Fabio Rossi <rossi.f@inwind.it> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gmsh: removed bad versionFabio Rossi2022-06-061-80/+0
| | | | | Signed-off-by: Fabio Rossi <rossi.f@inwind.it> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gmsh: various improvementsFabio Rossi2022-06-062-0/+100
| | | | | | | | | | | | * removed deprecated dep * fixed installation with USE=examples * fixed detection of opencascade * now the private API is also exported with USE=shared Signed-off-by: Fabio Rossi <rossi.f@inwind.it> Bug: https://bugs.gentoo.org/835702 Bug: https://bugs.gentoo.org/835194 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: subslot binder media-libs/assimp:=Joonas Niilola2022-06-033-3/+3
| | | | Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/opencascade: allow some exceptionsBernd Waibel2022-06-034-0/+4
| | | | | | | | | | | | Disabling some of the exceptions (BUILD_RELEASE_DISABLE_EXCEPTIONS=ON), which is the default, can lead to crashes of consumer applications. This patch disables this option, so those exceptions are enabled. Bug: https://github.com/FreeCAD/FreeCAD/issues/6200 Closes: https://bugs.gentoo.org/847916 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/25673 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/pdal: Stabilize 2.4.0-r1 amd64, #849392Jakov Smolić2022-06-031-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/fplll: fix bashism in the latest version's ./configure.Michael Orlitzky2022-06-022-1/+37
| | | | | | | | | Pending upstream pull request: https://github.com/fplll/fplll/pull/491 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/fplll: upstream bumpFrançois Bissey2022-06-022-0/+31
| | | | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Closes: https://github.com/gentoo/gentoo/pull/25710 Closes: https://bugs.gentoo.org/848867 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/rtree: enable py3.11Andrew Ammerlaan2022-06-011-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/hdf5: fix cmake include dir regressionRoman Beranek2022-06-011-0/+4
| | | | | | | | | | | | | | | | | An attempt to build hdf5-1.12.2-r1 with USE='fortran' on a system where an older version of the package has already been installed will fail due to system headers taking precedence over the ones present in the source directory. This exact issue (#808633) has already been fixed in 225b7ee for 1.12.1, though the workaround somehow hadn't made it into the new ebuild. This commit brings it in. Bug: HDFGroup/hdf5#1027 Closes: https://bugs.gentoo.org/808633 Signed-off-by: Roman Beranek <roman.beranek@prusa3d.com> Closes: https://github.com/gentoo/gentoo/pull/25712 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/tensorpipe: add to treeAlfredo Tupone2022-05-314-0/+52
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/cgnslib: add 4.3.0Alessandro Barbieri2022-05-283-0/+94
| | | | | | Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/25663 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libqalculate: add 4.2.0Sam James2022-05-282-0/+79
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/symmetrica: update upstream metadataArthur Zamarin2022-05-271-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/indilib: 1.9.6 version bumpAndreas Sturmlechner2022-05-262-0/+70
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/indilib: Drop 1.9.4Andreas Sturmlechner2022-05-263-182/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/kineto: add to treeAlfredo Tupone2022-05-264-0/+131
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/dealii: ebuild maintenanceMatthias Maier2022-05-253-12/+9
| | | | | | | | - update opencascade handling - drop version dependency on opencascade - remove multilib eclass inherit Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/gdal: needs hdf5[cxx]Sam James2022-05-231-1/+1
| | | | | Closes: https://bugs.gentoo.org/846530 Signed-off-by: Sam James <sam@gentoo.org>
* */*: Remove obsolete freecode remote-idUlrich Müller2022-05-231-1/+0
| | | | Signed-off-by: Ulrich Müller <ulm@gentoo.org>