Get Gentoo!
gentoo.org sites
gentoo.org Wiki Bugs Forums Packages
Planet Archives Sources
Infra Status
summaryrefslogtreecommitdiff
path: root/sci-biology
Commit message (Collapse)AuthorAgeFilesLines
* sci-biology/infernal: Used pushd twiceDavid Seifert2017-02-021-1/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/infernal: respect EPREFIXMartin Mokrejš2017-02-025-29/+42
| | | | Closes: https://github.com/gentoo/gentoo/pull/3774
* sci-biology/biopython: Remove ppc from KEYWORDSDavid Seifert2017-02-021-1/+1
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3766
* sci-biology/wise: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-301/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/vienna-rna: remove unused patches/fileMichael Mair-Keimberger (asterix)2017-01-299-266/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/velvet: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-126/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/treeviewx: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-14/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/raxml: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-29/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/psipred: remove unused patchesMichael Mair-Keimberger (asterix)2017-01-293-114/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/primer3: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-25/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/poa: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-13/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/ncbi-tools: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-27/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/muscle: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-26/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/meme: remove unused patchesMichael Mair-Keimberger (asterix)2017-01-294-302/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/mafft: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-192/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/last: remove unused patchesMichael Mair-Keimberger (asterix)2017-01-292-31/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/elph: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-133/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/bioperl-run: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-22/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/allpathslg: remove unused patchMichael Mair-Keimberger (asterix)2017-01-291-16/+0
| | | | Closes: https://github.com/gentoo/gentoo/pull/3708
* sci-biology/vaal: Remove oldDavid Seifert2017-01-241-42/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/vaal: amd64 stable wrt bug #606960Agostino Sarubbo2017-01-241-2/+2
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* fix quoting to a lot of patch callsMike Frysinger2017-01-201-1/+1
|
* sci-biology/rebase: Drop oldJustin Lecher2017-01-152-47/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/abyss: only openmpi is supportedMartin Mokrejš2017-01-151-7/+16
| | | | Closes: https://github.com/gentoo/gentoo/pull/3414
* sci-biology/mummer: Version bump to 3.9.4_alphaDavid Seifert2017-01-152-0/+84
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/rebase: ppc stable wrt bug #604448Agostino Sarubbo2017-01-151-1/+1
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/wgs-assembler: Drop oldPacho Ramos2017-01-154-212/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/mira: Removed unused patches.Lars Wendler2017-01-133-132/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/mira: Bump to EAPI-6. Ebuild cleanup.Lars Wendler2017-01-132-10/+39
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/mira: Update flex-2.6.3 fix; add cmath headerNicholas Vinson2017-01-132-2/+18
| | | | | | | | | | | | | Another round of testing discovered that caf_flexer.cc is also a pre-generated lexer. The commit updates the ebuild to remove that file as well. The file abs.C fails to find the pow() function. Modern versions of C++ store the header for that function in cmath. The file is updated to include that header. Gentoo-bug: 585942 Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3442
* sci-biology/mira: Adjusted sys-devel/flex dependency.Lars Wendler2017-01-111-1/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/mira: Force rebuild of lexer C++ source filesNicholas Vinson2017-01-111-1/+12
| | | | | | | | Upstream ships pregenerated C++ source files for its lexers. These files fail to compile under newer versions of GCC. This update forces them to be rebuilt by removing them before compilaiton starts. Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/rebase: x86 stable wrt bug #604448Agostino Sarubbo2017-01-041-1/+1
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/rebase: amd64 stable wrt bug #604448Agostino Sarubbo2017-01-041-2/+2
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/rebase: Drop oldJustin Lecher2017-01-026-235/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/biopython: Drop oldJustin Lecher2017-01-024-154/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/rebase: Version BumpJustin Lecher2017-01-022-0/+47
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/rebase: x86 stable wrt bug #590146Agostino Sarubbo2017-01-021-1/+1
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/biopython: x86 stable wrt bug #584210Agostino Sarubbo2017-01-021-1/+1
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/rebase: ppc stable wrt bug #590146Agostino Sarubbo2017-01-011-2/+2
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/biopython: ppc stable wrt bug #584210Agostino Sarubbo2017-01-011-2/+2
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/seqan: x86 stable wrt bug #525628Agostino Sarubbo2016-12-291-1/+1
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/seqan: amd64 stable wrt bug #525628Aaron Bauman2016-12-261-1/+1
|
* sci-biology/clustal-omega: Version BumpJustin Lecher2016-12-232-0/+39
| | | | | | | Thanks Fabian Sievers notifying me Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/abyss: Remove oldDavid Seifert2016-12-2011-310/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3183
* sci-biology/rebase-1604-r0: stable on amd64Tobias Klausmann2016-12-201-1/+1
| | | | Gentoo-Bug: 587822
* sci-biology/bamtools: Remove oldDavid Seifert2016-12-154-104/+0
| | | | | Package-Manager: portage-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/3120
* sci-biology/bamtools: Version bump to 2.4.1David Seifert2016-12-144-0/+314
| | | | | | | | Gentoo-bug: 550144, 596208 * Make C++ mode agnostic * Unbundle jsoncpp and use more modern versions Package-Manager: portage-2.3.3
* sci-biology/seqan: Add blocker for older SLOTsDavid Seifert2016-12-141-17/+23
| | | | | | Gentoo-bug: 602508 Package-Manager: portage-2.3.3
* sci-biology/rebase: Version BumpJustin Lecher2016-12-092-0/+47
| | | | | Package-Manager: portage-2.3.3 Signed-off-by: Justin Lecher <jlec@gentoo.org>