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| author |   Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2022-01-27 20:08:10 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2022-01-27 20:08:36 +0100 |
| commit | aea4f8147ac23b904f17d3890b398d5fb30c9eee (patch) | |
| tree | 3e091cb7f9fb68d15ee0fb03e757cf1c9b713227 /sci-biology | |
| parent | media-libs/codec2: Stabilize 1.0.3 arm, #832150 (diff) | |
| download | gentoo-aea4f8147ac23b904f17d3890b398d5fb30c9eee.tar.gz gentoo-aea4f8147ac23b904f17d3890b398d5fb30c9eee.tar.bz2 gentoo-aea4f8147ac23b904f17d3890b398d5fb30c9eee.zip | |
sci-biology/augustus: add version 3.4.0
Closes: https://bugs.gentoo.org/515996
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/augustus/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/augustus/augustus-3.4.0.ebuild | 47 |
2 files changed, 48 insertions, 0 deletions
diff --git a/sci-biology/augustus/Manifest b/sci-biology/augustus/Manifest index 7d0b1e3689b4..7ddb67b5c888 100644 --- a/sci-biology/augustus/Manifest +++ b/sci-biology/augustus/Manifest @@ -1 +1,2 @@ +DIST augustus-3.4.0.tar.gz 221652100 BLAKE2B dfc8c98107f5a955f688f3d2976ca936faf2ef7004095f6b9d7c1902a36ca5d3c9aef59cab1b82b56cd5c2abc7b67195c5030111ed68557d53128814b1bf6bab SHA512 ca1df1016589f55527a883429edd5024cbc32c1b32036c81f9df5e0967a7d194f5b7a82109e924f380627427d9731caa478e63cad8cd804c01521aed76d8c4a6 DIST augustus.2.5.5.tar.gz 70826249 BLAKE2B 3f3f1537c5c614f00298e1835eeb7bbe968987c3e0dee13299e1e26b4abf198d8635a93121b11722d2c90b63ff54cf153c72716d01c3ca033481bb54357b7bcf SHA512 33eb05d5c90200d2fc17026743d3a25e73aa3e217b8546f0bed4c94bcb460597d853377a67896e52e45ead5d736d13ed3b2c91b31fed8216da2920c825e8c20f diff --git a/sci-biology/augustus/augustus-3.4.0.ebuild b/sci-biology/augustus/augustus-3.4.0.ebuild new file mode 100644 index 000000000000..0608d11dee6c --- /dev/null +++ b/sci-biology/augustus/augustus-3.4.0.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DOCS_BUILDER="doxygen" +DOCS_CONFIG_NAME="doxygen.conf" +inherit docs + +DESCRIPTION="Eukaryotic gene predictor" +HOMEPAGE="https://bioinf.uni-greifswald.de/augustus/" +SRC_URI="https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" +S="${WORKDIR}/${P^}" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +RDEPEND=" + dev-db/sqlite:3 + dev-db/mysql++ + dev-db/mysql-connector-c + dev-libs/boost:= + sci-biology/bamtools + sci-libs/gsl + sci-libs/htslib + sci-libs/suitesparse + sci-mathematics/lpsolve + sys-libs/zlib +" +DEPEND="${RDEPEND}" + +src_compile() { + default + docs_compile +} + +src_install() { + einstalldocs + # from upstream Makefile install: + dodir "opt/${P}" + cp -a config bin scripts "${ED}/opt/${P}" || die + local file + for file in bin/*; do + dosym "../${P}/${file}" "/opt/${file}" + done +} |