aboutsummaryrefslogtreecommitdiff
Commit message (Collapse)AuthorAgeFilesLines
* sci-biology/ncbi-tools++-12.0.0: added the patch istelf dropping :%=% from ↵Martin Mokrejš2014-06-261-0/+22
| | | | LIB settings
* sci-biology/ncbi-tools++-12.0.0: dropped unneeded patchMartin Mokrejš2014-06-261-1660/+0
|
* sci-biology/ncbi-tools++-12.0.0: dropped unneeded patches, added direct ↵Martin Mokrejš2014-06-262-62/+0
| | | | dependency on glew because the dependency on virtual/opengl does not work
* sci-biology/ncbi-tools++-12.0.0: re-added update patch to configure so that ↵Martin Mokrejš2014-06-251-44262/+65
| | | | we can avoid eautoconf until there is autoconf-2.59 system-wide
* sci-biology/ncbi-tools++-12.0.0: first compile-able ebuild, wow, huge thanks ↵Martin Mokrejš2014-06-253-1/+435
| | | | to Aaron Ucko from NCBI developers on the cpp@ mailing list
* more changes to get ncbi-tools++-12.0.0 compiledMartin Mokrejš2014-06-255-1438/+1932
|
* dropped the duplicate part from the patchMartin Mokrejš2014-06-231-1660/+0
|
* add an extra patch for configure until we find a way to ensure user has ↵Martin Mokrejš2014-06-231-0/+46073
| | | | autoconf-2.59 or for ncbi-tools++-12.0.0 may have autoconf-2.60
* add patches for 12.0.0 to support autoconf-2.60 (so far 2.59 was needed)Martin Mokrejš2014-06-231-0/+1660
|
* Start to work on it againJustin Lecher2014-01-252-442/+296
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Add upstream ncbi-tools++-9.0.0-remove-LZO-definition-upstream.patch with ↵Martin Mokrejš2013-09-141-0/+10
| | | | line offset changes.
* Fix URL to point to a public SVN repositoryMartin Mokrejš2013-09-142-0/+20
|
* more 12.0.0 cleanup, still not workingMartin Mokrejš2013-09-143-7/+27
|
* add ↵Martin Mokrejš2013-09-131-0/+10
| | | | ncbi-tools++-9.0.0-fix-undef-reference-to-GenBankReaders_Register_Id1.patch; get around a bug in the C++ Toolkit's handling of --without-runpath with certain linker versions by running configure with -Wl,-rpath-link,_build/lib in LDFLAGS (assuming _build is an absolute path; otherwise, prepend /home/mmokrejs/proj/sci/sci-biology/ncbi-tools++/) [from Aaron Ucko].
* Remove redundant connect from DLL_LIB lines.Martin Mokrejš2013-09-132-2/+2
|
* No, the fix-creaders-linking is needed for 12.0.0 as well.Martin Mokrejš2013-09-131-0/+10
|
* Latest release which needs so far only the two Gentoo patches. Would be ↵Martin Mokrejš2013-09-132-0/+2077
| | | | better to drop from their filename to avoid their duplication I think.
* add glew to dependencies inferrred via mesa; fix lib/libxobjread.so: ↵Martin Mokrejš2013-09-131-0/+10
| | | | undefined reference to 'AlignmentFileFree' message by upstream patch
* First working patchJustin Lecher2013-02-211-156/+602
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Next couple of fixesJustin Lecher2013-02-041-39/+356
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* And another step forwardJustin Lecher2013-02-031-4/+4
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Some more patchingJustin Lecher2013-01-311-23/+357
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* More work on as-needed problemsJustin Lecher2013-01-302-0/+980
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* put back in the --as-needed LDFLAG to yield hopefully smaller executables; ↵Martin Mokrejs2013-01-071-21/+13
| | | | recreating the patch so that it applies automatically
* sci-biology/ncbi-tools++-9.0.0: although masked a not passing repoman checks ↵Martin Mokrejs2013-01-075-0/+259
| | | | this ebuild works for me, finally. All patches from upstream.
* sci-biology/ncbi-tools++-9.0.0: a sketch of an updated ebuild, bug #279606, ↵Martin Mokrejs2012-12-285-0/+166
does not pass repoman checks due to IUSE items