# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/tinker/tinker-5.1.09.ebuild,v 1.4 2010/12/16 13:59:36 jlec Exp $ EAPI="2" inherit eutils java-pkg-opt-2 toolchain-funcs DESCRIPTION="Molecular modeling package that includes force fields, such as AMBER and CHARMM" HOMEPAGE="http://dasher.wustl.edu/tinker/" SRC_URI="http://dasher.wustl.edu/${PN}/downloads/${P}.tar.gz" SLOT="0" LICENSE="Tinker" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="examples" DEPEND=">=virtual/jdk-1.6" RDEPEND=" dev-libs/maloc !dev-util/diffuse >=virtual/jre-1.6" RESTRICT="mirror" S="${WORKDIR}"/tinker/source pkg_setup() { java-pkg-opt-2_pkg_setup } src_prepare() { cd .. epatch "${FILESDIR}"/${PV}-Makefile.patch } src_compile() { local javalib= for i in $(java-config -g LDPATH | sed 's|:| |g'); do [[ -f ${i}/libjvm.so ]] && javalib=${i} done emake -e \ -f ../make/Makefile \ F77="$(tc-getFC)" \ CC="$(tc-getCC) -c" \ F77FLAGS=-c \ OPTFLAGS="${FFLAGS}" \ LINKFLAGS="${LDFLAGS} -Wl,-rpath ${javalib}" \ INCLUDEDIR="$(java-pkg_get-jni-cflags) -I${EPREFIX}/usr/include" \ LIBS=" -lmaloc -L${javalib} -ljvm" \ all || die mkdir "${S}"/../bin || die emake \ -f ../make/Makefile \ BINDIR="${S}"/../bin \ rename || die } src_test() { cd "${WORKDIR}"/tinker/test/ for test in *.run; do einfo "Testing ${test} ..." bash ${test} || die done } src_install() { dobin "${WORKDIR}"/${PN}/perl/mdavg "${WORKDIR}"/${PN}/bin/* || die insinto /usr/share/${PN}/ doins -r "${WORKDIR}"/${PN}/params || die dodoc \ "${WORKDIR}"/${PN}/doc/{*.txt,announce/release-*,*.pdf,0README} || die if use examples; then insinto /usr/share/${P} doins -r "${WORKDIR}"/${PN}/example || die doins -r "${WORKDIR}"/${PN}/test || die fi }