# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.3.ebuild,v 1.4 2010/12/16 08:55:54 jlec Exp $ EAPI="3" PYTHON_DEPEND="python? 2" inherit autotools eutils flag-o-matic python toolchain-funcs versionator MY_PV=$(get_version_component_range 1-3) MY_P="${PN}-${MY_PV}" DESCRIPTION="Software for evaluating the electrostatic properties of nanoscale biomolecular systems" HOMEPAGE="http://apbs.sourceforge.net/" SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz" SLOT="0" LICENSE="BSD" IUSE="arpack doc fetk mpi openmp python tools" KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" DEPEND=" dev-libs/maloc[mpi=] virtual/blas sys-libs/readline arpack? ( sci-libs/arpack ) fetk? ( media-libs/sg sci-libs/amd sci-libs/punc sci-libs/mc sci-libs/gamer sci-libs/umfpack sci-libs/superlu ) mpi? ( virtual/mpi )" RDEPEND="${DEPEND}" S="${WORKDIR}"/"${MY_P}-source" pkg_setup() { use python && python_set_active_version 2 if use mpi && use python; then einfo "mpi and python support are incompatible" einfo "Disabling USE=python" fi if [[ -z ${MAXMEM} ]]; then einfo "You can specify the max amount of RAM used" einfo "by setting MAXMEM=\"your size in MB\"" else einfo "Settings max memory usage to ${MAXMEM} MB" fi } src_prepare() { epatch \ "${FILESDIR}"/${P}-openmp.patch \ "${FILESDIR}"/${PN}-1.2.1b-install-fix.patch \ "${FILESDIR}"/${P}-contrib.patch \ "${FILESDIR}"/${P}-link.patch \ "${FILESDIR}"/${PN}-1.2.1b-autoconf-2.64.patch \ "${FILESDIR}"/${P}-shared.patch \ "${FILESDIR}"/${PN}-1.2.1b-multilib.patch \ "${FILESDIR}"/${PN}-1.2.1b-parallelbuild.patch \ "${FILESDIR}"/${P}-mainroutines.patch sed "s:GENTOO_PKG_NAME:${PN}:g" \ -i Makefile.am || die "Cannot correct package name" # this test is broken sed '/ion-pmf/d' -i examples/Makefile.am || die sed 's:libmaloc.a:libmaloc.so:g' -i configure.ac || die eautoreconf find . -name "._*" -exec rm -f '{}' \; } src_configure() { local myconf="--docdir=${EPREFIX}/usr/share/doc/${PF}" use arpack && myconf="${myconf} --with-arpack=${EPREFIX}/usr/$(get_libdir)" # check which mpi version is installed and tell configure if use mpi; then export CC="${EPREFIX}/usr/bin/mpicc" export F77="${EPREFIX}/usr/bin/mpif77" if has_version sys-cluster/mpich; then myconf="${myconf} --with-mpich=${EPREFIX}/usr" elif has_version sys-cluster/mpich2; then myconf="${myconf} --with-mpich2=${EPREFIX}/usr" elif has_version sys-cluster/openmpi; then myconf="${myconf} --with-openmpi=${EPREFIX}/usr" fi fi || die "Failed to select proper mpi implementation" # we need the tools target for python if use python && ! use tools; then myconf="${myconf} --enable-tools" fi if use fetk; then myconf="${myconf} --with-fetk-include=${EPREFIX}/usr/include --with-fetk-library=${EPREFIX}/usr/$(get_libdir)" else myconf="${myconf} --disable-fetk" fi [[ -n ${MAXMEM} ]] && myconf="${myconf} --with-maxmem=${MAXMEM}" econf \ --disable-maloc-rebuild \ --enable-shared \ --with-blas=-lblas \ $(use_enable openmp) \ $(use_enable python) \ $(use_enable tools) \ ${myconf} } src_test() { export LC_NUMERIC=C cd examples && make test \ || die "Tests failed" grep -q 'FAILED' "${S}"/examples/TESTRESULTS.log && die "Tests failed" } src_install() { emake -j1 DESTDIR="${D}" install \ || die "make install failed" if use tools; then mv tools/mesh/{,mesh-}analysis || die dobin tools/mesh/* || die if use arpack; then dobin tools/arpack/* || die fi insinto /usr/share/${PN} doins -r tools/conversion || die doins -r tools/visualization/opendx || die dobin tools/manip/{born,coulomb} || die doins -r tools/matlab || die fi insinto $(python_get_sitedir)/${PN} doins tools/manip/*.py || die if use python && ! use mpi; then insinto $(python_get_sitedir)/${PN} doins tools/python/{*.py,*.pqr,*.so} || die doins tools/python/*/{*.py,*.so} || die fi dodoc AUTHORS INSTALL README NEWS ChangeLog \ || die "Failed to install docs" if use doc; then dohtml -r doc/* || die "Failed to install html docs" fi } pkg_postinst() { python_mod_optimize ${PN} } pkg_postrm() { python_mod_cleanup ${PN} }